miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 228100 0.68 0.912948
Target:  5'- cGGGAGCgaggagggCGUCGGccgcaacgucguGCUGGGCG-CCGa -3'
miRNA:   3'- -UCCUCGa-------GCAGCU------------CGACUUGCuGGCg -5'
8959 5' -55.8 NC_002512.2 + 226692 0.68 0.894784
Target:  5'- cGGGccgucgcccgcGGCggCGUCGAGCgacgGGA-GGCCGCg -3'
miRNA:   3'- -UCC-----------UCGa-GCAGCUCGa---CUUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 225659 0.7 0.829155
Target:  5'- cGGGGCUCGaCGucccGCUccccGCGGCCGCu -3'
miRNA:   3'- uCCUCGAGCaGCu---CGAcu--UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 224054 0.71 0.786549
Target:  5'- gGGGAcGaCUCGUCGGGCgucuGCGACCu- -3'
miRNA:   3'- -UCCU-C-GAGCAGCUCGacu-UGCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 223798 0.66 0.965706
Target:  5'- cGGGGa-CGUCG-GCg--GCGACCGCc -3'
miRNA:   3'- uCCUCgaGCAGCuCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 222708 0.68 0.918561
Target:  5'- gAGGAGUgCGUCGccaccugccuGCUGGACGGCaacgGCc -3'
miRNA:   3'- -UCCUCGaGCAGCu---------CGACUUGCUGg---CG- -5'
8959 5' -55.8 NC_002512.2 + 221819 0.72 0.750078
Target:  5'- gAGGAGCUCGUCucGGCguc-CGACcCGCg -3'
miRNA:   3'- -UCCUCGAGCAGc-UCGacuuGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 221748 0.74 0.633456
Target:  5'- cGGAcGCgcCGUCGAacggcaGCUGGGCGGCCGUc -3'
miRNA:   3'- uCCU-CGa-GCAGCU------CGACUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 221408 0.67 0.929116
Target:  5'- gGGGAGg-CGgCGGGuCUGuccGACGGCCGCc -3'
miRNA:   3'- -UCCUCgaGCaGCUC-GAC---UUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 221120 0.74 0.643363
Target:  5'- cGGGAGCUucCGaCGGcGCUGAG-GACCGCg -3'
miRNA:   3'- -UCCUCGA--GCaGCU-CGACUUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 220669 0.67 0.951602
Target:  5'- uGGcccGCcgCGUCGuGCUGGGCGACgGg -3'
miRNA:   3'- uCCu--CGa-GCAGCuCGACUUGCUGgCg -5'
8959 5' -55.8 NC_002512.2 + 219658 0.69 0.888295
Target:  5'- gAGGuucGCcCGUCGGGauCUGGGCGcGCCGCc -3'
miRNA:   3'- -UCCu--CGaGCAGCUC--GACUUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 217874 0.75 0.584044
Target:  5'- gGGGAGCgCGUcCGAGaucGGCGGCCGCg -3'
miRNA:   3'- -UCCUCGaGCA-GCUCgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 215051 0.67 0.947545
Target:  5'- gAGGAGCUcacCGUCGucGGCg--GCGucuACCGCg -3'
miRNA:   3'- -UCCUCGA---GCAGC--UCGacuUGC---UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 214233 0.68 0.907113
Target:  5'- cAGGcGGCUCGUCG-GCUcgcCGcCCGCg -3'
miRNA:   3'- -UCC-UCGAGCAGCuCGAcuuGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 212427 0.75 0.593887
Target:  5'- cGGGAGgUCGaguUCGGGCcGGcCGGCCGCg -3'
miRNA:   3'- -UCCUCgAGC---AGCUCGaCUuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211905 0.71 0.804037
Target:  5'- cGGGGCugccgcgUCGUCGAGCgucgggaccccgacgGGACGuCCGUg -3'
miRNA:   3'- uCCUCG-------AGCAGCUCGa--------------CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211770 0.7 0.812565
Target:  5'- cGGGAGgaCGUgGAgGCccGggUGGCCGCg -3'
miRNA:   3'- -UCCUCgaGCAgCU-CGa-CuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211448 0.66 0.96249
Target:  5'- cGGAGCUCG---GGCgccuGCGGCUGCc -3'
miRNA:   3'- uCCUCGAGCagcUCGacu-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211252 0.68 0.923951
Target:  5'- gAGGcGGC-CGUCGAcGCcaUGuuCGACCGCu -3'
miRNA:   3'- -UCC-UCGaGCAGCU-CG--ACuuGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.