miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 211075 1.12 0.003144
Target:  5'- cAGGAGCUCGUCGAGCUGAACGACCGCa -3'
miRNA:   3'- -UCCUCGAGCAGCUCGACUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 209290 0.73 0.663146
Target:  5'- uGGAGCgcugCGUCaAGgaGAACGGCgGCg -3'
miRNA:   3'- uCCUCGa---GCAGcUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 208712 0.66 0.95907
Target:  5'- cGGGGCUCGcCGAccagaucggGAGCG-CCGCc -3'
miRNA:   3'- uCCUCGAGCaGCUcga------CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 207108 0.68 0.920744
Target:  5'- cGGGcgcgcAGCUCGUCGGGCaccagcugguuguacUGGcacACGAUCGUc -3'
miRNA:   3'- -UCC-----UCGAGCAGCUCG---------------ACU---UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 205032 0.66 0.95907
Target:  5'- cGGGGCcgCGUCcgccGCcGAcCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCAGcu--CGaCUuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 204828 0.68 0.918561
Target:  5'- cGGcGGCUcCGUCcGGgaGGACGACgGCg -3'
miRNA:   3'- uCC-UCGA-GCAGcUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 200303 0.66 0.968723
Target:  5'- uGGGGCUCGUCc-GCccucgggGAGCGGcuucCCGCc -3'
miRNA:   3'- uCCUCGAGCAGcuCGa------CUUGCU----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 199706 0.68 0.916343
Target:  5'- cGGGGGCUCGaguguuaaauaaucUCGAcaaCUGAcacggucAUGGCCGCg -3'
miRNA:   3'- -UCCUCGAGC--------------AGCUc--GACU-------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 199198 0.68 0.894784
Target:  5'- -uGAGgUCGUaCGGGUUGucgucCGACCGCg -3'
miRNA:   3'- ucCUCgAGCA-GCUCGACuu---GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 198274 0.7 0.837201
Target:  5'- cGGAGCUgcUCGAgGCUGAucuucagggaGCGgGCCGCg -3'
miRNA:   3'- uCCUCGAgcAGCU-CGACU----------UGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 195649 0.72 0.712052
Target:  5'- cGGcGGCUcCGUgGAGCUGAACGucACCGa -3'
miRNA:   3'- uCC-UCGA-GCAgCUCGACUUGC--UGGCg -5'
8959 5' -55.8 NC_002512.2 + 195405 0.68 0.901058
Target:  5'- cGGGAGCUCGUCuucucggGGACGugCaGCg -3'
miRNA:   3'- -UCCUCGAGCAGcucga--CUUGCugG-CG- -5'
8959 5' -55.8 NC_002512.2 + 194820 0.67 0.934058
Target:  5'- cAGGAGCUCGgcacCGugguGCUGuccCGGCCcguGCg -3'
miRNA:   3'- -UCCUCGAGCa---GCu---CGACuu-GCUGG---CG- -5'
8959 5' -55.8 NC_002512.2 + 194531 0.74 0.633456
Target:  5'- cGGGAuaGCUCGUCGAuGCUGAG-GGCCa- -3'
miRNA:   3'- -UCCU--CGAGCAGCU-CGACUUgCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 194490 0.69 0.874687
Target:  5'- -cGAGUUCGUCGAGCUcuACaACCGg -3'
miRNA:   3'- ucCUCGAGCAGCUCGAcuUGcUGGCg -5'
8959 5' -55.8 NC_002512.2 + 194237 0.74 0.603756
Target:  5'- cGGuGUcgUCGUCGAGCaUGAugauauucGCGGCCGCc -3'
miRNA:   3'- uCCuCG--AGCAGCUCG-ACU--------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 193725 0.71 0.768542
Target:  5'- aGGGAGCUgcUCGAGUucgUGGGCGAaCGCg -3'
miRNA:   3'- -UCCUCGAgcAGCUCG---ACUUGCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 193368 0.72 0.731226
Target:  5'- gAGGAGUUCGUCGccgcgGGCggGGACGACaccgaGUg -3'
miRNA:   3'- -UCCUCGAGCAGC-----UCGa-CUUGCUGg----CG- -5'
8959 5' -55.8 NC_002512.2 + 192584 0.67 0.929116
Target:  5'- cGGAGCggacCGUCccGCUGcuGCGGCgCGCg -3'
miRNA:   3'- uCCUCGa---GCAGcuCGACu-UGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 191663 0.74 0.623548
Target:  5'- cGGAGaCguccgCGUCccgGGGCUGGGCGACCGg -3'
miRNA:   3'- uCCUC-Ga----GCAG---CUCGACUUGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.