miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 60676 0.72 0.759362
Target:  5'- cAGGuGCUCGagacguaccaguUCGcGCUGGugGACcCGCa -3'
miRNA:   3'- -UCCuCGAGC------------AGCuCGACUugCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 83694 0.72 0.750078
Target:  5'- -uGAcGgUCGUCGAGCccaGGGCGACCGUg -3'
miRNA:   3'- ucCU-CgAGCAGCUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 194531 0.74 0.633456
Target:  5'- cGGGAuaGCUCGUCGAuGCUGAG-GGCCa- -3'
miRNA:   3'- -UCCU--CGAGCAGCU-CGACUUgCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 71566 0.74 0.603756
Target:  5'- cGGAGCgCGgacUCGcGCcGGACGACCGCg -3'
miRNA:   3'- uCCUCGaGC---AGCuCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 123035 0.75 0.593887
Target:  5'- gAGGAGgUCGUCGAGau---CGACUGCa -3'
miRNA:   3'- -UCCUCgAGCAGCUCgacuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 19166 0.75 0.574233
Target:  5'- aAGG-GCUCGUCGAcGCUGAggaaGCGGgugaucucCCGCg -3'
miRNA:   3'- -UCCuCGAGCAGCU-CGACU----UGCU--------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 155439 0.75 0.554733
Target:  5'- uGGAGgUCaUCGAGgUGAGCGACgCGCc -3'
miRNA:   3'- uCCUCgAGcAGCUCgACUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 117040 0.76 0.535432
Target:  5'- cGGGAGUUCGcCGAGau-GACGGCCGUg -3'
miRNA:   3'- -UCCUCGAGCaGCUCgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 100278 0.76 0.52587
Target:  5'- cGGAGCUCGgCGAGCgGGGCGAguUCGUc -3'
miRNA:   3'- uCCUCGAGCaGCUCGaCUUGCU--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 83148 0.77 0.443239
Target:  5'- -cGAGgUCGUCGGGCccGGCGGCCGCg -3'
miRNA:   3'- ucCUCgAGCAGCUCGacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 123569 0.74 0.643363
Target:  5'- gGGGAGagCGaCGGGCUGGACGAcgggcCCGCg -3'
miRNA:   3'- -UCCUCgaGCaGCUCGACUUGCU-----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 123238 0.74 0.643363
Target:  5'- -cGGGCUCGacuucuUCGAGCUcGACGACCGg -3'
miRNA:   3'- ucCUCGAGC------AGCUCGAcUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 20839 0.72 0.740696
Target:  5'- gAGGAGC-CGUCGGaaucGCUccggGAcGCGGCCGCc -3'
miRNA:   3'- -UCCUCGaGCAGCU----CGA----CU-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 122051 0.72 0.721675
Target:  5'- cGGGGCggCGUCGgcGGCUGuGACGACaGCg -3'
miRNA:   3'- uCCUCGa-GCAGC--UCGAC-UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 23098 0.72 0.712052
Target:  5'- cGGAGUUCGgcgugcggaugaUCGcGCUGGACGACCcCa -3'
miRNA:   3'- uCCUCGAGC------------AGCuCGACUUGCUGGcG- -5'
8959 5' -55.8 NC_002512.2 + 121845 0.73 0.702365
Target:  5'- gGGGAGgaCGgCGGGgaGGACGGCgGCg -3'
miRNA:   3'- -UCCUCgaGCaGCUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 20322 0.73 0.701393
Target:  5'- gAGGAGCUCGUCGA-------GACCGCg -3'
miRNA:   3'- -UCCUCGAGCAGCUcgacuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 113324 0.73 0.682834
Target:  5'- gAGGGGCUCGUCGcaca-GGCGGCCGUu -3'
miRNA:   3'- -UCCUCGAGCAGCucgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130553 0.73 0.673005
Target:  5'- cGGAuGCUCGUCGAGgaGuucgucguaGGCCGCc -3'
miRNA:   3'- uCCU-CGAGCAGCUCgaCuug------CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 118799 0.73 0.673005
Target:  5'- cGGGAGCUgugggccccCGUCGuGgUcGGCGACCGCg -3'
miRNA:   3'- -UCCUCGA---------GCAGCuCgAcUUGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.