miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 24695 0.67 0.938775
Target:  5'- cGGGGGuCUCGUCGAGgacgcGGGCGAgggagaCGCg -3'
miRNA:   3'- -UCCUC-GAGCAGCUCga---CUUGCUg-----GCG- -5'
8959 5' -55.8 NC_002512.2 + 26542 0.66 0.968723
Target:  5'- cGGcAGCUCGcccgaGGGCUGcaaGAUCGCg -3'
miRNA:   3'- uCC-UCGAGCag---CUCGACuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 28243 0.66 0.965706
Target:  5'- cGGGGC-CGUCGcGCcgcGAguACGACgGCg -3'
miRNA:   3'- uCCUCGaGCAGCuCGa--CU--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 29688 0.66 0.958004
Target:  5'- -cGGGCUCGUCGcGCUcguccgucucggagGAGCccauGACCGUg -3'
miRNA:   3'- ucCUCGAGCAGCuCGA--------------CUUG----CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 31827 0.66 0.95907
Target:  5'- gAGGGGacgCG-CGAGacguccCUGuGACGACCGCg -3'
miRNA:   3'- -UCCUCga-GCaGCUC------GAC-UUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 33184 0.68 0.918561
Target:  5'- -aGAGC-CgGUCGGGCUGGcggACGguGCCGCu -3'
miRNA:   3'- ucCUCGaG-CAGCUCGACU---UGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 34937 0.7 0.829154
Target:  5'- cGGGGUcgCGgcgacgggGAGCgGAGCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCag------CUCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 38926 0.66 0.965706
Target:  5'- gAGGGGC-CGcCGcGGC-GGGCGcCCGCg -3'
miRNA:   3'- -UCCUCGaGCaGC-UCGaCUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 45274 0.66 0.965393
Target:  5'- cGGGGcgcucgcGCUCGUcucgCGGGUcGGACGgACCGCc -3'
miRNA:   3'- -UCCU-------CGAGCA----GCUCGaCUUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 45398 0.7 0.852762
Target:  5'- cGGGAcugucGCUCGUgCGGGCgcucGACGGCgGCg -3'
miRNA:   3'- -UCCU-----CGAGCA-GCUCGac--UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 47230 0.68 0.897319
Target:  5'- aAGGAGUUCGgCGAggccgagacgcaggcGCUGGAgaaGAUCGCg -3'
miRNA:   3'- -UCCUCGAGCaGCU---------------CGACUUg--CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 49434 0.66 0.955442
Target:  5'- -cGAGC-CGUCGAGaaaUGAcggGCG-CCGCc -3'
miRNA:   3'- ucCUCGaGCAGCUCg--ACU---UGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 50742 0.69 0.888295
Target:  5'- gAGGAGCUgcugggccucucCGgCGAGCUGGaucacGCGAUCGa -3'
miRNA:   3'- -UCCUCGA------------GCaGCUCGACU-----UGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 53706 0.68 0.918561
Target:  5'- gAGGAGCuggagaagcugUCGgccagguacuUCGAGCUGcugcgcGACGuCCGCg -3'
miRNA:   3'- -UCCUCG-----------AGC----------AGCUCGAC------UUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 56315 0.71 0.768541
Target:  5'- cGGAGCUCGgCGcAGCUGAAgcgcgaguaGACgGCa -3'
miRNA:   3'- uCCUCGAGCaGC-UCGACUUg--------CUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 58086 0.66 0.968723
Target:  5'- cAGGAGCgcgcgcCGUCGGGacgaggUGAgccaccuccGCGACCGa -3'
miRNA:   3'- -UCCUCGa-----GCAGCUCg-----ACU---------UGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 60676 0.72 0.759362
Target:  5'- cAGGuGCUCGagacguaccaguUCGcGCUGGugGACcCGCa -3'
miRNA:   3'- -UCCuCGAGC------------AGCuCGACUugCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 60907 0.72 0.759362
Target:  5'- ---cGCUCgGUCGAGCgGAcacCGACCGCg -3'
miRNA:   3'- uccuCGAG-CAGCUCGaCUu--GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 63022 0.78 0.408919
Target:  5'- cAGGAGCUCGgCGAGCaggGAGCG-CCGg -3'
miRNA:   3'- -UCCUCGAGCaGCUCGa--CUUGCuGGCg -5'
8959 5' -55.8 NC_002512.2 + 63887 0.7 0.829154
Target:  5'- cGGAGC-CGUCgggaGAGUUGAcgaagaacCGACCGCc -3'
miRNA:   3'- uCCUCGaGCAG----CUCGACUu-------GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.