Results 21 - 40 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 194820 | 0.67 | 0.934058 |
Target: 5'- cAGGAGCUCGgcacCGugguGCUGuccCGGCCcguGCg -3' miRNA: 3'- -UCCUCGAGCa---GCu---CGACuu-GCUGG---CG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 124290 | 0.67 | 0.943271 |
Target: 5'- cGGGcgugcGGCUCGaccgcgCgGAGCUGAucGgGGCCGCg -3' miRNA: 3'- -UCC-----UCGAGCa-----G-CUCGACU--UgCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 109047 | 0.66 | 0.95907 |
Target: 5'- gGGGGGCUCGgg-----GGACGACCGg -3' miRNA: 3'- -UCCUCGAGCagcucgaCUUGCUGGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 145413 | 0.66 | 0.965394 |
Target: 5'- cGGGucuucuucGGCUCGUCcgccgcgGuGCUGGACGAgauccuCCGCc -3' miRNA: 3'- -UCC--------UCGAGCAG-------CuCGACUUGCU------GGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 155960 | 0.68 | 0.920744 |
Target: 5'- gAGGAGUUCGUgaagcagcaCGGccuguacguccccgcGCUGAGCGAgUGCc -3' miRNA: 3'- -UCCUCGAGCA---------GCU---------------CGACUUGCUgGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 192584 | 0.67 | 0.929116 |
Target: 5'- cGGAGCggacCGUCccGCUGcuGCGGCgCGCg -3' miRNA: 3'- uCCUCGa---GCAGcuCGACu-UGCUG-GCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 215051 | 0.67 | 0.947545 |
Target: 5'- gAGGAGCUcacCGUCGucGGCg--GCGucuACCGCg -3' miRNA: 3'- -UCCUCGA---GCAGC--UCGacuUGC---UGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 223798 | 0.66 | 0.965706 |
Target: 5'- cGGGGa-CGUCG-GCg--GCGACCGCc -3' miRNA: 3'- uCCUCgaGCAGCuCGacuUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 221408 | 0.67 | 0.929116 |
Target: 5'- gGGGAGg-CGgCGGGuCUGuccGACGGCCGCc -3' miRNA: 3'- -UCCUCgaGCaGCUC-GAC---UUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 95529 | 0.66 | 0.968723 |
Target: 5'- --cAGCUCGUggacggugCGGGuCUGGAgcuCGGCCGCg -3' miRNA: 3'- uccUCGAGCA--------GCUC-GACUU---GCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 132591 | 0.67 | 0.943271 |
Target: 5'- cAGGGGUUCGgCGAGCaGAcgcuCGGCCu- -3' miRNA: 3'- -UCCUCGAGCaGCUCGaCUu---GCUGGcg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 184038 | 0.67 | 0.934058 |
Target: 5'- cGGuccGCUgGUCGAGUucgUGugaGACCGCg -3' miRNA: 3'- uCCu--CGAgCAGCUCG---ACuugCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 220669 | 0.67 | 0.951602 |
Target: 5'- uGGcccGCcgCGUCGuGCUGGGCGACgGg -3' miRNA: 3'- uCCu--CGa-GCAGCuCGACUUGCUGgCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 89001 | 0.66 | 0.955442 |
Target: 5'- cGGAGCgcggggaCGUCGGGCaGcGCGAuCCGa -3' miRNA: 3'- uCCUCGa------GCAGCUCGaCuUGCU-GGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 211448 | 0.66 | 0.96249 |
Target: 5'- cGGAGCUCG---GGCgccuGCGGCUGCc -3' miRNA: 3'- uCCUCGAGCagcUCGacu-UGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 191524 | 0.66 | 0.96249 |
Target: 5'- gAGGAGgC-CGUgGGGUcGGGCGACCcgGCg -3' miRNA: 3'- -UCCUC-GaGCAgCUCGaCUUGCUGG--CG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 157152 | 0.68 | 0.918561 |
Target: 5'- cGGGGCgggCGgCGGGCcgggcggcgUGGGCGGCgGCg -3' miRNA: 3'- uCCUCGa--GCaGCUCG---------ACUUGCUGgCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 222708 | 0.68 | 0.918561 |
Target: 5'- gAGGAGUgCGUCGccaccugccuGCUGGACGGCaacgGCc -3' miRNA: 3'- -UCCUCGaGCAGCu---------CGACUUGCUGg---CG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 102640 | 0.68 | 0.923951 |
Target: 5'- cGGAGCaggaccccgaugUCGUagacCGGGgaGAggGCGGCCGCc -3' miRNA: 3'- uCCUCG------------AGCA----GCUCgaCU--UGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 116205 | 0.67 | 0.929116 |
Target: 5'- cAGGcaGGCg-GUCGAGCUGAcgaAgGugCGCc -3' miRNA: 3'- -UCC--UCGagCAGCUCGACU---UgCugGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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