miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 200303 0.66 0.968723
Target:  5'- uGGGGCUCGUCc-GCccucgggGAGCGGcuucCCGCc -3'
miRNA:   3'- uCCUCGAGCAGcuCGa------CUUGCU----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 116972 0.68 0.923951
Target:  5'- -cGAGCUgcUGaUCGAGCUGGuccgcgacgcgGCGACCGa -3'
miRNA:   3'- ucCUCGA--GC-AGCUCGACU-----------UGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 166450 0.67 0.92861
Target:  5'- cGGGGGCgacggCGcCGGGCUcGAgggcggggacggcGgGACCGCg -3'
miRNA:   3'- -UCCUCGa----GCaGCUCGA-CU-------------UgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 94819 0.67 0.943271
Target:  5'- gGGGAGC-CGUCccgGAGCcgccggaggaaGAGCGugGCCGCg -3'
miRNA:   3'- -UCCUCGaGCAG---CUCGa----------CUUGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 103298 0.66 0.955442
Target:  5'- gAGGAGCcggcCGUCGuaGGaCaGGACGGCCGa -3'
miRNA:   3'- -UCCUCGa---GCAGC--UC-GaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 204828 0.68 0.918561
Target:  5'- cGGcGGCUcCGUCcGGgaGGACGACgGCg -3'
miRNA:   3'- uCC-UCGA-GCAGcUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 211252 0.68 0.923951
Target:  5'- gAGGcGGC-CGUCGAcGCcaUGuuCGACCGCu -3'
miRNA:   3'- -UCC-UCGaGCAGCU-CG--ACuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 205032 0.66 0.95907
Target:  5'- cGGGGCcgCGUCcgccGCcGAcCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCAGcu--CGaCUuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 149283 0.67 0.934058
Target:  5'- gAGGAGCg---CGAGgaGGGCGagaucgucgaccGCCGCg -3'
miRNA:   3'- -UCCUCGagcaGCUCgaCUUGC------------UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 194820 0.67 0.934058
Target:  5'- cAGGAGCUCGgcacCGugguGCUGuccCGGCCcguGCg -3'
miRNA:   3'- -UCCUCGAGCa---GCu---CGACuu-GCUGG---CG- -5'
8959 5' -55.8 NC_002512.2 + 117397 0.66 0.96249
Target:  5'- ----aCUCGUCGGGCUGcGCGcACaCGCu -3'
miRNA:   3'- uccucGAGCAGCUCGACuUGC-UG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 153392 0.66 0.96249
Target:  5'- cGGAGCgaCGUgGAGC---GCGGCgGCg -3'
miRNA:   3'- uCCUCGa-GCAgCUCGacuUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 33184 0.68 0.918561
Target:  5'- -aGAGC-CgGUCGGGCUGGcggACGguGCCGCu -3'
miRNA:   3'- ucCUCGaG-CAGCUCGACU---UGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 189832 0.68 0.918561
Target:  5'- uGGAGuCUCGUcccgCGGGCgaAACGuCCGCa -3'
miRNA:   3'- uCCUC-GAGCA----GCUCGacUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 116205 0.67 0.929116
Target:  5'- cAGGcaGGCg-GUCGAGCUGAcgaAgGugCGCc -3'
miRNA:   3'- -UCC--UCGagCAGCUCGACU---UgCugGCG- -5'
8959 5' -55.8 NC_002512.2 + 101374 0.67 0.947545
Target:  5'- gGGGAgacgaugacguGCUCGUCgGAGCucgUGGugGugcuCCGCu -3'
miRNA:   3'- -UCCU-----------CGAGCAG-CUCG---ACUugCu---GGCG- -5'
8959 5' -55.8 NC_002512.2 + 154695 0.66 0.954312
Target:  5'- -cGAGCggccguccggCGUCGAGCggcgcgacgGAacggcguugcguccGCGGCCGCg -3'
miRNA:   3'- ucCUCGa---------GCAGCUCGa--------CU--------------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 191524 0.66 0.96249
Target:  5'- gAGGAGgC-CGUgGGGUcGGGCGACCcgGCg -3'
miRNA:   3'- -UCCUC-GaGCAgCUCGaCUUGCUGG--CG- -5'
8959 5' -55.8 NC_002512.2 + 153350 0.67 0.943271
Target:  5'- cGGGucGGCggGUCccgcuGGGCUGGGCGGCgGCu -3'
miRNA:   3'- -UCC--UCGagCAG-----CUCGACUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 190529 0.67 0.929116
Target:  5'- -cGAGCUgGUCgGGGCgagGGAcCGGCUGCu -3'
miRNA:   3'- ucCUCGAgCAG-CUCGa--CUU-GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.