miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 200303 0.66 0.968723
Target:  5'- uGGGGCUCGUCc-GCccucgggGAGCGGcuucCCGCc -3'
miRNA:   3'- uCCUCGAGCAGcuCGa------CUUGCU----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 215051 0.67 0.947545
Target:  5'- gAGGAGCUcacCGUCGucGGCg--GCGucuACCGCg -3'
miRNA:   3'- -UCCUCGA---GCAGC--UCGacuUGC---UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 124290 0.67 0.943271
Target:  5'- cGGGcgugcGGCUCGaccgcgCgGAGCUGAucGgGGCCGCg -3'
miRNA:   3'- -UCC-----UCGAGCa-----G-CUCGACU--UgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211075 1.12 0.003144
Target:  5'- cAGGAGCUCGUCGAGCUGAACGACCGCa -3'
miRNA:   3'- -UCCUCGAGCAGCUCGACUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 191524 0.66 0.96249
Target:  5'- gAGGAGgC-CGUgGGGUcGGGCGACCcgGCg -3'
miRNA:   3'- -UCCUC-GaGCAgCUCGaCUUGCUGG--CG- -5'
8959 5' -55.8 NC_002512.2 + 153392 0.66 0.96249
Target:  5'- cGGAGCgaCGUgGAGC---GCGGCgGCg -3'
miRNA:   3'- uCCUCGa-GCAgCUCGacuUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 211448 0.66 0.96249
Target:  5'- cGGAGCUCG---GGCgccuGCGGCUGCc -3'
miRNA:   3'- uCCUCGAGCagcUCGacu-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 205032 0.66 0.95907
Target:  5'- cGGGGCcgCGUCcgccGCcGAcCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCAGcu--CGaCUuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 89001 0.66 0.955442
Target:  5'- cGGAGCgcggggaCGUCGGGCaGcGCGAuCCGa -3'
miRNA:   3'- uCCUCGa------GCAGCUCGaCuUGCU-GGCg -5'
8959 5' -55.8 NC_002512.2 + 77203 0.67 0.947545
Target:  5'- gAGGAGgCcccccugCGUCGAGCgaccgggaggcGAACGAgCGCc -3'
miRNA:   3'- -UCCUC-Ga------GCAGCUCGa----------CUUGCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 154695 0.66 0.954312
Target:  5'- -cGAGCggccguccggCGUCGAGCggcgcgacgGAacggcguugcguccGCGGCCGCg -3'
miRNA:   3'- ucCUCGa---------GCAGCUCGa--------CU--------------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 109047 0.66 0.95907
Target:  5'- gGGGGGCUCGgg-----GGACGACCGg -3'
miRNA:   3'- -UCCUCGAGCagcucgaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 95529 0.66 0.968723
Target:  5'- --cAGCUCGUggacggugCGGGuCUGGAgcuCGGCCGCg -3'
miRNA:   3'- uccUCGAGCA--------GCUC-GACUU---GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 220669 0.67 0.951602
Target:  5'- uGGcccGCcgCGUCGuGCUGGGCGACgGg -3'
miRNA:   3'- uCCu--CGa-GCAGCuCGACUUGCUGgCg -5'
8959 5' -55.8 NC_002512.2 + 223798 0.66 0.965706
Target:  5'- cGGGGa-CGUCG-GCg--GCGACCGCc -3'
miRNA:   3'- uCCUCgaGCAGCuCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 208712 0.66 0.95907
Target:  5'- cGGGGCUCGcCGAccagaucggGAGCG-CCGCc -3'
miRNA:   3'- uCCUCGAGCaGCUcga------CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 101374 0.67 0.947545
Target:  5'- gGGGAgacgaugacguGCUCGUCgGAGCucgUGGugGugcuCCGCu -3'
miRNA:   3'- -UCCU-----------CGAGCAG-CUCG---ACUugCu---GGCG- -5'
8959 5' -55.8 NC_002512.2 + 132591 0.67 0.943271
Target:  5'- cAGGGGUUCGgCGAGCaGAcgcuCGGCCu- -3'
miRNA:   3'- -UCCUCGAGCaGCUCGaCUu---GCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 145413 0.66 0.965394
Target:  5'- cGGGucuucuucGGCUCGUCcgccgcgGuGCUGGACGAgauccuCCGCc -3'
miRNA:   3'- -UCC--------UCGAGCAG-------CuCGACUUGCU------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 117397 0.66 0.96249
Target:  5'- ----aCUCGUCGGGCUGcGCGcACaCGCu -3'
miRNA:   3'- uccucGAGCAGCUCGACuUGC-UG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.