Results 41 - 60 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 207108 | 0.68 | 0.920744 |
Target: 5'- cGGGcgcgcAGCUCGUCGGGCaccagcugguuguacUGGcacACGAUCGUc -3' miRNA: 3'- -UCC-----UCGAGCAGCUCG---------------ACU---UGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 215051 | 0.67 | 0.947545 |
Target: 5'- gAGGAGCUcacCGUCGucGGCg--GCGucuACCGCg -3' miRNA: 3'- -UCCUCGA---GCAGC--UCGacuUGC---UGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 223798 | 0.66 | 0.965706 |
Target: 5'- cGGGGa-CGUCG-GCg--GCGACCGCc -3' miRNA: 3'- uCCUCgaGCAGCuCGacuUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 211252 | 0.68 | 0.923951 |
Target: 5'- gAGGcGGC-CGUCGAcGCcaUGuuCGACCGCu -3' miRNA: 3'- -UCC-UCGaGCAGCU-CG--ACuuGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 95529 | 0.66 | 0.968723 |
Target: 5'- --cAGCUCGUggacggugCGGGuCUGGAgcuCGGCCGCg -3' miRNA: 3'- uccUCGAGCA--------GCUC-GACUU---GCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 91084 | 0.69 | 0.881595 |
Target: 5'- cGGGAGCgguUCGUgcgCGAGgaGGACGGgcCCGUg -3' miRNA: 3'- -UCCUCG---AGCA---GCUCgaCUUGCU--GGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 191524 | 0.66 | 0.96249 |
Target: 5'- gAGGAGgC-CGUgGGGUcGGGCGACCcgGCg -3' miRNA: 3'- -UCCUC-GaGCAgCUCGaCUUGCUGG--CG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 219658 | 0.69 | 0.888295 |
Target: 5'- gAGGuucGCcCGUCGGGauCUGGGCGcGCCGCc -3' miRNA: 3'- -UCCu--CGaGCAGCUC--GACUUGC-UGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 226692 | 0.68 | 0.894784 |
Target: 5'- cGGGccgucgcccgcGGCggCGUCGAGCgacgGGA-GGCCGCg -3' miRNA: 3'- -UCC-----------UCGa-GCAGCUCGa---CUUgCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 164261 | 0.68 | 0.901058 |
Target: 5'- cGGGGGC-CGUCGGGU----CGAUCGCc -3' miRNA: 3'- -UCCUCGaGCAGCUCGacuuGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 228100 | 0.68 | 0.912948 |
Target: 5'- cGGGAGCgaggagggCGUCGGccgcaacgucguGCUGGGCG-CCGa -3' miRNA: 3'- -UCCUCGa-------GCAGCU------------CGACUUGCuGGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 157152 | 0.68 | 0.918561 |
Target: 5'- cGGGGCgggCGgCGGGCcgggcggcgUGGGCGGCgGCg -3' miRNA: 3'- uCCUCGa--GCaGCUCG---------ACUUGCUGgCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 222708 | 0.68 | 0.918561 |
Target: 5'- gAGGAGUgCGUCGccaccugccuGCUGGACGGCaacgGCc -3' miRNA: 3'- -UCCUCGaGCAGCu---------CGACUUGCUGg---CG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 166450 | 0.67 | 0.92861 |
Target: 5'- cGGGGGCgacggCGcCGGGCUcGAgggcggggacggcGgGACCGCg -3' miRNA: 3'- -UCCUCGa----GCaGCUCGA-CU-------------UgCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 221408 | 0.67 | 0.929116 |
Target: 5'- gGGGAGg-CGgCGGGuCUGuccGACGGCCGCc -3' miRNA: 3'- -UCCUCgaGCaGCUC-GAC---UUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 194820 | 0.67 | 0.934058 |
Target: 5'- cAGGAGCUCGgcacCGugguGCUGuccCGGCCcguGCg -3' miRNA: 3'- -UCCUCGAGCa---GCu---CGACuu-GCUGG---CG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 124290 | 0.67 | 0.943271 |
Target: 5'- cGGGcgugcGGCUCGaccgcgCgGAGCUGAucGgGGCCGCg -3' miRNA: 3'- -UCC-----UCGAGCa-----G-CUCGACU--UgCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 220669 | 0.67 | 0.951602 |
Target: 5'- uGGcccGCcgCGUCGuGCUGGGCGACgGg -3' miRNA: 3'- uCCu--CGa-GCAGCuCGACUUGCUGgCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 89001 | 0.66 | 0.955442 |
Target: 5'- cGGAGCgcggggaCGUCGGGCaGcGCGAuCCGa -3' miRNA: 3'- uCCUCGa------GCAGCUCGaCuUGCU-GGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 211448 | 0.66 | 0.96249 |
Target: 5'- cGGAGCUCG---GGCgccuGCGGCUGCc -3' miRNA: 3'- uCCUCGAGCagcUCGacu-UGCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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