miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 20839 0.72 0.740696
Target:  5'- gAGGAGC-CGUCGGaaucGCUccggGAcGCGGCCGCc -3'
miRNA:   3'- -UCCUCGaGCAGCU----CGA----CU-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 221819 0.72 0.750078
Target:  5'- gAGGAGCUCGUCucGGCguc-CGACcCGCg -3'
miRNA:   3'- -UCCUCGAGCAGc-UCGacuuGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 83694 0.72 0.750078
Target:  5'- -uGAcGgUCGUCGAGCccaGGGCGACCGUg -3'
miRNA:   3'- ucCU-CgAGCAGCUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 60676 0.72 0.759362
Target:  5'- cAGGuGCUCGagacguaccaguUCGcGCUGGugGACcCGCa -3'
miRNA:   3'- -UCCuCGAGC------------AGCuCGACUugCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 60907 0.72 0.759362
Target:  5'- ---cGCUCgGUCGAGCgGAcacCGACCGCg -3'
miRNA:   3'- uccuCGAG-CAGCUCGaCUu--GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 126672 0.72 0.759362
Target:  5'- gAGGAGCaUCGUCGAGCgGAuc--CUGCg -3'
miRNA:   3'- -UCCUCG-AGCAGCUCGaCUugcuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130121 0.72 0.759362
Target:  5'- aGGGAGCUgGaggccCGGGgUGGugucGCGGCCGCg -3'
miRNA:   3'- -UCCUCGAgCa----GCUCgACU----UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 85555 0.71 0.768541
Target:  5'- cGGGGCUCGagGAgGCgcgggagcggGAGCGGCCGg -3'
miRNA:   3'- uCCUCGAGCagCU-CGa---------CUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 56315 0.71 0.768541
Target:  5'- cGGAGCUCGgCGcAGCUGAAgcgcgaguaGACgGCa -3'
miRNA:   3'- uCCUCGAGCaGC-UCGACUUg--------CUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 193725 0.71 0.768542
Target:  5'- aGGGAGCUgcUCGAGUucgUGGGCGAaCGCg -3'
miRNA:   3'- -UCCUCGAgcAGCUCG---ACUUGCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 123542 0.71 0.768542
Target:  5'- uGGcGAGCUCG-CGGGaC-GAGCGACCGg -3'
miRNA:   3'- -UC-CUCGAGCaGCUC-GaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 158798 0.71 0.777606
Target:  5'- cGGGGCgUCGUCGA-CUucuCGGCCGCg -3'
miRNA:   3'- uCCUCG-AGCAGCUcGAcuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 99989 0.71 0.786549
Target:  5'- cGGGAGagcggaUCGUCG-GCgaGGGCGACgGCg -3'
miRNA:   3'- -UCCUCg-----AGCAGCuCGa-CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 224054 0.71 0.786549
Target:  5'- gGGGAcGaCUCGUCGGGCgucuGCGACCu- -3'
miRNA:   3'- -UCCU-C-GAGCAGCUCGacu-UGCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 80865 0.71 0.786549
Target:  5'- cGGGGCUCGgugUCGGGCgGuccGCGGCgGCc -3'
miRNA:   3'- uCCUCGAGC---AGCUCGaCu--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 175258 0.71 0.795362
Target:  5'- cAGGGccgcGCUCGgCGgguAGCUG-GCGGCCGCg -3'
miRNA:   3'- -UCCU----CGAGCaGC---UCGACuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 152917 0.71 0.795362
Target:  5'- -cGAGCUCGUCucgggucgccaGAGUcggGAGCGACUGUg -3'
miRNA:   3'- ucCUCGAGCAG-----------CUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211905 0.71 0.804037
Target:  5'- cGGGGCugccgcgUCGUCGAGCgucgggaccccgacgGGACGuCCGUg -3'
miRNA:   3'- uCCUCG-------AGCAGCUCGa--------------CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 157676 0.71 0.804037
Target:  5'- uGGAGUUCGgcu-GCUGAugGAcuuCCGCg -3'
miRNA:   3'- uCCUCGAGCagcuCGACUugCU---GGCG- -5'
8959 5' -55.8 NC_002512.2 + 122098 0.7 0.812565
Target:  5'- cGGAcGCgagGUCGGcGCUGAcguCGGCCGCg -3'
miRNA:   3'- uCCU-CGag-CAGCU-CGACUu--GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.