miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 122098 0.7 0.812565
Target:  5'- cGGAcGCgagGUCGGcGCUGAcguCGGCCGCg -3'
miRNA:   3'- uCCU-CGag-CAGCU-CGACUu--GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 68592 0.7 0.812565
Target:  5'- cAGGuGCUCGUCGuaGGCc-AGCGACuCGCc -3'
miRNA:   3'- -UCCuCGAGCAGC--UCGacUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 11569 0.7 0.812565
Target:  5'- gAGG-GCUaCGggGAGCacGAGCGGCCGCc -3'
miRNA:   3'- -UCCuCGA-GCagCUCGa-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 211770 0.7 0.812565
Target:  5'- cGGGAGgaCGUgGAgGCccGggUGGCCGCg -3'
miRNA:   3'- -UCCUCgaGCAgCU-CGa-CuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 80788 0.7 0.82094
Target:  5'- gAGGAGCggCG-CGAGgaGGAgGAgCGCg -3'
miRNA:   3'- -UCCUCGa-GCaGCUCgaCUUgCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 100229 0.7 0.82094
Target:  5'- gAGGcGGCgUCGaCGGGCg--GCGACCGCg -3'
miRNA:   3'- -UCC-UCG-AGCaGCUCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 63887 0.7 0.829154
Target:  5'- cGGAGC-CGUCgggaGAGUUGAcgaagaacCGACCGCc -3'
miRNA:   3'- uCCUCGaGCAG----CUCGACUu-------GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 108591 0.7 0.829154
Target:  5'- gGGGGGCccCGggGAGCg--GCGGCCGCg -3'
miRNA:   3'- -UCCUCGa-GCagCUCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 34937 0.7 0.829154
Target:  5'- cGGGGUcgCGgcgacgggGAGCgGAGCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCag------CUCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 225659 0.7 0.829155
Target:  5'- cGGGGCUCGaCGucccGCUccccGCGGCCGCu -3'
miRNA:   3'- uCCUCGAGCaGCu---CGAcu--UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 167745 0.7 0.829155
Target:  5'- gAGGAGCU-GcCGGGCgucGGCGACCGg -3'
miRNA:   3'- -UCCUCGAgCaGCUCGac-UUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 98935 0.7 0.829967
Target:  5'- gGGGAGCcagagccggaugcaGUCGGGCgggGAAccgggcCGACCGCg -3'
miRNA:   3'- -UCCUCGag------------CAGCUCGa--CUU------GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 198274 0.7 0.837201
Target:  5'- cGGAGCUgcUCGAgGCUGAucuucagggaGCGgGCCGCg -3'
miRNA:   3'- uCCUCGAgcAGCU-CGACU----------UGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 156552 0.7 0.845072
Target:  5'- cGGAGCgCGUgaCG-GCUGAGCGGaaGCg -3'
miRNA:   3'- uCCUCGaGCA--GCuCGACUUGCUggCG- -5'
8959 5' -55.8 NC_002512.2 + 20661 0.7 0.845072
Target:  5'- cAGGAGCUCGUguuugaccgugaCGGGCcGcaGGCG-CCGCu -3'
miRNA:   3'- -UCCUCGAGCA------------GCUCGaC--UUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 96839 0.7 0.852762
Target:  5'- cAGGGGCUCaggC-AGCUGcGCGACuCGCu -3'
miRNA:   3'- -UCCUCGAGca-GcUCGACuUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 45398 0.7 0.852762
Target:  5'- cGGGAcugucGCUCGUgCGGGCgcucGACGGCgGCg -3'
miRNA:   3'- -UCCU-----CGAGCA-GCUCGac--UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 127505 0.7 0.852762
Target:  5'- cGGGAGCauccccUCGUCcGGCUccaggaccuccGGACGACCGa -3'
miRNA:   3'- -UCCUCG------AGCAGcUCGA-----------CUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 127833 0.7 0.852763
Target:  5'- cGGGAGgUCGUCG-GCg--GCGuCCGCc -3'
miRNA:   3'- -UCCUCgAGCAGCuCGacuUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 12385 0.69 0.860266
Target:  5'- -cGAGCUCGccuUCGGGCggcGGCGGCgGCg -3'
miRNA:   3'- ucCUCGAGC---AGCUCGac-UUGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.