miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 83694 0.72 0.750078
Target:  5'- -uGAcGgUCGUCGAGCccaGGGCGACCGUg -3'
miRNA:   3'- ucCU-CgAGCAGCUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 60676 0.72 0.759362
Target:  5'- cAGGuGCUCGagacguaccaguUCGcGCUGGugGACcCGCa -3'
miRNA:   3'- -UCCuCGAGC------------AGCuCGACUugCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 80788 0.7 0.82094
Target:  5'- gAGGAGCggCG-CGAGgaGGAgGAgCGCg -3'
miRNA:   3'- -UCCUCGa-GCaGCUCgaCUUgCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 34937 0.7 0.829154
Target:  5'- cGGGGUcgCGgcgacgggGAGCgGAGCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCag------CUCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 63887 0.7 0.829154
Target:  5'- cGGAGC-CGUCgggaGAGUUGAcgaagaacCGACCGCc -3'
miRNA:   3'- uCCUCGaGCAG----CUCGACUu-------GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 108591 0.7 0.829154
Target:  5'- gGGGGGCccCGggGAGCg--GCGGCCGCg -3'
miRNA:   3'- -UCCUCGa-GCagCUCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 20661 0.7 0.845072
Target:  5'- cAGGAGCUCGUguuugaccgugaCGGGCcGcaGGCG-CCGCu -3'
miRNA:   3'- -UCCUCGAGCA------------GCUCGaC--UUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 156552 0.7 0.845072
Target:  5'- cGGAGCgCGUgaCG-GCUGAGCGGaaGCg -3'
miRNA:   3'- uCCUCGaGCA--GCuCGACUUGCUggCG- -5'
8959 5' -55.8 NC_002512.2 + 96839 0.7 0.852762
Target:  5'- cAGGGGCUCaggC-AGCUGcGCGACuCGCu -3'
miRNA:   3'- -UCCUCGAGca-GcUCGACuUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 45398 0.7 0.852762
Target:  5'- cGGGAcugucGCUCGUgCGGGCgcucGACGGCgGCg -3'
miRNA:   3'- -UCCU-----CGAGCA-GCUCGac--UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 100229 0.7 0.82094
Target:  5'- gAGGcGGCgUCGaCGGGCg--GCGACCGCg -3'
miRNA:   3'- -UCC-UCG-AGCaGCUCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 68592 0.7 0.812565
Target:  5'- cAGGuGCUCGUCGuaGGCc-AGCGACuCGCc -3'
miRNA:   3'- -UCCuCGAGCAGC--UCGacUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 60907 0.72 0.759362
Target:  5'- ---cGCUCgGUCGAGCgGAcacCGACCGCg -3'
miRNA:   3'- uccuCGAG-CAGCUCGaCUu--GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130121 0.72 0.759362
Target:  5'- aGGGAGCUgGaggccCGGGgUGGugucGCGGCCGCg -3'
miRNA:   3'- -UCCUCGAgCa----GCUCgACU----UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 126672 0.72 0.759362
Target:  5'- gAGGAGCaUCGUCGAGCgGAuc--CUGCg -3'
miRNA:   3'- -UCCUCG-AGCAGCUCGaCUugcuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 56315 0.71 0.768541
Target:  5'- cGGAGCUCGgCGcAGCUGAAgcgcgaguaGACgGCa -3'
miRNA:   3'- uCCUCGAGCaGC-UCGACUUg--------CUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 85555 0.71 0.768541
Target:  5'- cGGGGCUCGagGAgGCgcgggagcggGAGCGGCCGg -3'
miRNA:   3'- uCCUCGAGCagCU-CGa---------CUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 80865 0.71 0.786549
Target:  5'- cGGGGCUCGgugUCGGGCgGuccGCGGCgGCc -3'
miRNA:   3'- uCCUCGAGC---AGCUCGaCu--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 152917 0.71 0.795362
Target:  5'- -cGAGCUCGUCucgggucgccaGAGUcggGAGCGACUGUg -3'
miRNA:   3'- ucCUCGAGCAG-----------CUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 11569 0.7 0.812565
Target:  5'- gAGG-GCUaCGggGAGCacGAGCGGCCGCc -3'
miRNA:   3'- -UCCuCGA-GCagCUCGa-CUUGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.