miRNA display CGI


Results 41 - 60 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 19166 0.75 0.574233
Target:  5'- aAGG-GCUCGUCGAcGCUGAggaaGCGGgugaucucCCGCg -3'
miRNA:   3'- -UCCuCGAGCAGCU-CGACU----UGCU--------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 155439 0.75 0.554733
Target:  5'- uGGAGgUCaUCGAGgUGAGCGACgCGCc -3'
miRNA:   3'- uCCUCgAGcAGCUCgACUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 117040 0.76 0.535432
Target:  5'- cGGGAGUUCGcCGAGau-GACGGCCGUg -3'
miRNA:   3'- -UCCUCGAGCaGCUCgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 100278 0.76 0.52587
Target:  5'- cGGAGCUCGgCGAGCgGGGCGAguUCGUc -3'
miRNA:   3'- uCCUCGAGCaGCUCGaCUUGCU--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 83148 0.77 0.443239
Target:  5'- -cGAGgUCGUCGGGCccGGCGGCCGCg -3'
miRNA:   3'- ucCUCgAGCAGCUCGacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 20322 0.73 0.701393
Target:  5'- gAGGAGCUCGUCGA-------GACCGCg -3'
miRNA:   3'- -UCCUCGAGCAGCUcgacuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 121845 0.73 0.702365
Target:  5'- gGGGAGgaCGgCGGGgaGGACGGCgGCg -3'
miRNA:   3'- -UCCUCgaGCaGCUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 11569 0.7 0.812565
Target:  5'- gAGG-GCUaCGggGAGCacGAGCGGCCGCc -3'
miRNA:   3'- -UCCuCGA-GCagCUCGa-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 152917 0.71 0.795362
Target:  5'- -cGAGCUCGUCucgggucgccaGAGUcggGAGCGACUGUg -3'
miRNA:   3'- ucCUCGAGCAG-----------CUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 80865 0.71 0.786549
Target:  5'- cGGGGCUCGgugUCGGGCgGuccGCGGCgGCc -3'
miRNA:   3'- uCCUCGAGC---AGCUCGaCu--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 85555 0.71 0.768541
Target:  5'- cGGGGCUCGagGAgGCgcgggagcggGAGCGGCCGg -3'
miRNA:   3'- uCCUCGAGCagCU-CGa---------CUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 56315 0.71 0.768541
Target:  5'- cGGAGCUCGgCGcAGCUGAAgcgcgaguaGACgGCa -3'
miRNA:   3'- uCCUCGAGCaGC-UCGACUUg--------CUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 126672 0.72 0.759362
Target:  5'- gAGGAGCaUCGUCGAGCgGAuc--CUGCg -3'
miRNA:   3'- -UCCUCG-AGCAGCUCGaCUugcuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130121 0.72 0.759362
Target:  5'- aGGGAGCUgGaggccCGGGgUGGugucGCGGCCGCg -3'
miRNA:   3'- -UCCUCGAgCa----GCUCgACU----UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 60907 0.72 0.759362
Target:  5'- ---cGCUCgGUCGAGCgGAcacCGACCGCg -3'
miRNA:   3'- uccuCGAG-CAGCUCGaCUu--GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 60676 0.72 0.759362
Target:  5'- cAGGuGCUCGagacguaccaguUCGcGCUGGugGACcCGCa -3'
miRNA:   3'- -UCCuCGAGC------------AGCuCGACUugCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 83694 0.72 0.750078
Target:  5'- -uGAcGgUCGUCGAGCccaGGGCGACCGUg -3'
miRNA:   3'- ucCU-CgAGCAGCUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 20839 0.72 0.740696
Target:  5'- gAGGAGC-CGUCGGaaucGCUccggGAcGCGGCCGCc -3'
miRNA:   3'- -UCCUCGaGCAGCU----CGA----CU-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 122051 0.72 0.721675
Target:  5'- cGGGGCggCGUCGgcGGCUGuGACGACaGCg -3'
miRNA:   3'- uCCUCGa-GCAGC--UCGAC-UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 23098 0.72 0.712052
Target:  5'- cGGAGUUCGgcgugcggaugaUCGcGCUGGACGACCcCa -3'
miRNA:   3'- uCCUCGAGC------------AGCuCGACUUGCUGGcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.