miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 134694 0.66 0.955442
Target:  5'- cGGGcGCUCGcCGGGCUGcccgacauccuGGgGGCCGg -3'
miRNA:   3'- -UCCuCGAGCaGCUCGAC-----------UUgCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 49434 0.66 0.955442
Target:  5'- -cGAGC-CGUCGAGaaaUGAcggGCG-CCGCc -3'
miRNA:   3'- ucCUCGaGCAGCUCg--ACU---UGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 154695 0.66 0.954312
Target:  5'- -cGAGCggccguccggCGUCGAGCggcgcgacgGAacggcguugcguccGCGGCCGCg -3'
miRNA:   3'- ucCUCGa---------GCAGCUCGa--------CU--------------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 121893 0.67 0.951995
Target:  5'- gGGGAcGCUCGgcgacgcgcggggagCGAGCggGAcgagGCGGCgGCg -3'
miRNA:   3'- -UCCU-CGAGCa--------------GCUCGa-CU----UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 220669 0.67 0.951602
Target:  5'- uGGcccGCcgCGUCGuGCUGGGCGACgGg -3'
miRNA:   3'- uCCu--CGa-GCAGCuCGACUUGCUGgCg -5'
8959 5' -55.8 NC_002512.2 + 131549 0.67 0.951601
Target:  5'- cGGccAGUUCGUCGcGCUcggGAGCGACUucaGCg -3'
miRNA:   3'- uCC--UCGAGCAGCuCGA---CUUGCUGG---CG- -5'
8959 5' -55.8 NC_002512.2 + 72108 0.67 0.951601
Target:  5'- cGGuuCUUGaugCGAcaGCUGAccaGCGACCGCa -3'
miRNA:   3'- uCCucGAGCa--GCU--CGACU---UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 113670 0.67 0.951601
Target:  5'- gGGGGGCgcaccuUCGUC-AGCU---CGACCGCc -3'
miRNA:   3'- -UCCUCG------AGCAGcUCGAcuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 19854 0.67 0.951206
Target:  5'- cGGAGCggaaggCG-CGAcgguacgGCUGGACGuugguCCGCa -3'
miRNA:   3'- uCCUCGa-----GCaGCU-------CGACUUGCu----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 101374 0.67 0.947545
Target:  5'- gGGGAgacgaugacguGCUCGUCgGAGCucgUGGugGugcuCCGCu -3'
miRNA:   3'- -UCCU-----------CGAGCAG-CUCG---ACUugCu---GGCG- -5'
8959 5' -55.8 NC_002512.2 + 106799 0.67 0.947545
Target:  5'- cGGGGUcgaCGUCGGGaggGGGCGagGCCGCc -3'
miRNA:   3'- uCCUCGa--GCAGCUCga-CUUGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 77203 0.67 0.947545
Target:  5'- gAGGAGgCcccccugCGUCGAGCgaccgggaggcGAACGAgCGCc -3'
miRNA:   3'- -UCCUC-Ga------GCAGCUCGa----------CUUGCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 215051 0.67 0.947545
Target:  5'- gAGGAGCUcacCGUCGucGGCg--GCGucuACCGCg -3'
miRNA:   3'- -UCCUCGA---GCAGC--UCGacuUGC---UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 72922 0.67 0.947545
Target:  5'- cAGGAuGCcgaCGUCG-GC-GAACGGCCGg -3'
miRNA:   3'- -UCCU-CGa--GCAGCuCGaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 152305 0.67 0.947545
Target:  5'- aGGGAccGCUCGgCGuGGCUcGGACGcCCGUg -3'
miRNA:   3'- -UCCU--CGAGCaGC-UCGA-CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 100034 0.67 0.946708
Target:  5'- aAGGGGCUccucCGcCGGGCgcugagacgcggGGGCGGCgGCg -3'
miRNA:   3'- -UCCUCGA----GCaGCUCGa-----------CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 72887 0.67 0.943271
Target:  5'- cGGGGCUCGggccCGaAGCg--GCGGCCGa -3'
miRNA:   3'- uCCUCGAGCa---GC-UCGacuUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 132591 0.67 0.943271
Target:  5'- cAGGGGUUCGgCGAGCaGAcgcuCGGCCu- -3'
miRNA:   3'- -UCCUCGAGCaGCUCGaCUu---GCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 94819 0.67 0.943271
Target:  5'- gGGGAGC-CGUCccgGAGCcgccggaggaaGAGCGugGCCGCg -3'
miRNA:   3'- -UCCUCGaGCAG---CUCGa----------CUUGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 124290 0.67 0.943271
Target:  5'- cGGGcgugcGGCUCGaccgcgCgGAGCUGAucGgGGCCGCg -3'
miRNA:   3'- -UCC-----UCGAGCa-----G-CUCGACU--UgCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.