miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 117397 0.66 0.96249
Target:  5'- ----aCUCGUCGGGCUGcGCGcACaCGCu -3'
miRNA:   3'- uccucGAGCAGCUCGACuUGC-UG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 153392 0.66 0.96249
Target:  5'- cGGAGCgaCGUgGAGC---GCGGCgGCg -3'
miRNA:   3'- uCCUCGa-GCAgCUCGacuUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 191524 0.66 0.96249
Target:  5'- gAGGAGgC-CGUgGGGUcGGGCGACCcgGCg -3'
miRNA:   3'- -UCCUC-GaGCAgCUCGaCUUGCUGG--CG- -5'
8959 5' -55.8 NC_002512.2 + 211448 0.66 0.96249
Target:  5'- cGGAGCUCG---GGCgccuGCGGCUGCc -3'
miRNA:   3'- uCCUCGAGCagcUCGacu-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 140866 0.66 0.96249
Target:  5'- uGGAGUUCGcUCGGaucgcGCUGcccGACGuccCCGCg -3'
miRNA:   3'- uCCUCGAGC-AGCU-----CGAC---UUGCu--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 135672 0.66 0.96249
Target:  5'- cAGGc-CUCGgaggCGGcGCUcAGCGACCGCa -3'
miRNA:   3'- -UCCucGAGCa---GCU-CGAcUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 2849 0.66 0.96249
Target:  5'- cGGGcAGCUgCGgcaCGAGCuUGGGCaGACCGa -3'
miRNA:   3'- -UCC-UCGA-GCa--GCUCG-ACUUG-CUGGCg -5'
8959 5' -55.8 NC_002512.2 + 106694 0.66 0.96249
Target:  5'- cGGuGUUCGgcgaugGGGCUcuccgGGAUGACCGCg -3'
miRNA:   3'- uCCuCGAGCag----CUCGA-----CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 21308 0.66 0.95907
Target:  5'- cGGAcccGCUgcgCGUCGAGCUcggccuGACGcACCGCc -3'
miRNA:   3'- uCCU---CGA---GCAGCUCGAc-----UUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 109047 0.66 0.95907
Target:  5'- gGGGGGCUCGgg-----GGACGACCGg -3'
miRNA:   3'- -UCCUCGAGCagcucgaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 208712 0.66 0.95907
Target:  5'- cGGGGCUCGcCGAccagaucggGAGCG-CCGCc -3'
miRNA:   3'- uCCUCGAGCaGCUcga------CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 121531 0.66 0.95907
Target:  5'- gGGGAGCUCcggcgcgccgggGUCGAGC---ACGAgaCGCu -3'
miRNA:   3'- -UCCUCGAG------------CAGCUCGacuUGCUg-GCG- -5'
8959 5' -55.8 NC_002512.2 + 205032 0.66 0.95907
Target:  5'- cGGGGCcgCGUCcgccGCcGAcCGGCCGCg -3'
miRNA:   3'- uCCUCGa-GCAGcu--CGaCUuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 155381 0.66 0.95907
Target:  5'- cGGGGCggcggCGcCG-GC-GGGCGAUCGCg -3'
miRNA:   3'- uCCUCGa----GCaGCuCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 31827 0.66 0.95907
Target:  5'- gAGGGGacgCG-CGAGacguccCUGuGACGACCGCg -3'
miRNA:   3'- -UCCUCga-GCaGCUC------GAC-UUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 22088 0.66 0.958717
Target:  5'- cGGaGAGCUCGUCcGGCcggGAgACGAcgccgucCCGCa -3'
miRNA:   3'- -UC-CUCGAGCAGcUCGa--CU-UGCU-------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 29688 0.66 0.958004
Target:  5'- -cGGGCUCGUCGcGCUcguccgucucggagGAGCccauGACCGUg -3'
miRNA:   3'- ucCUCGAGCAGCuCGA--------------CUUG----CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 134694 0.66 0.955442
Target:  5'- cGGGcGCUCGcCGGGCUGcccgacauccuGGgGGCCGg -3'
miRNA:   3'- -UCCuCGAGCaGCUCGAC-----------UUgCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 49434 0.66 0.955442
Target:  5'- -cGAGC-CGUCGAGaaaUGAcggGCG-CCGCc -3'
miRNA:   3'- ucCUCGaGCAGCUCg--ACU---UGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 4228 0.66 0.955442
Target:  5'- gGGGAGCgggaCGUCGAGCcccGACGGgUGg -3'
miRNA:   3'- -UCCUCGa---GCAGCUCGac-UUGCUgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.