miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 101629 0.66 0.968723
Target:  5'- cGGGAcgcgagucgccGCUCGagggGAGCgcGGCGGCCGCg -3'
miRNA:   3'- -UCCU-----------CGAGCag--CUCGacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 70822 0.66 0.968723
Target:  5'- gAGGGGCgCGUCGuccgccucGCcccgGGACGagauGCCGCg -3'
miRNA:   3'- -UCCUCGaGCAGCu-------CGa---CUUGC----UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 26542 0.66 0.968723
Target:  5'- cGGcAGCUCGcccgaGGGCUGcaaGAUCGCg -3'
miRNA:   3'- uCC-UCGAGCag---CUCGACuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 75558 0.66 0.968723
Target:  5'- -cGGGCUCGcCgGGGCgGGGCcGCCGCc -3'
miRNA:   3'- ucCUCGAGCaG-CUCGaCUUGcUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 95529 0.66 0.968723
Target:  5'- --cAGCUCGUggacggugCGGGuCUGGAgcuCGGCCGCg -3'
miRNA:   3'- uccUCGAGCA--------GCUC-GACUU---GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 103609 0.66 0.968723
Target:  5'- cGGAuGUUCGUCucccuGCUGAACaaGGCCGa -3'
miRNA:   3'- uCCU-CGAGCAGcu---CGACUUG--CUGGCg -5'
8959 5' -55.8 NC_002512.2 + 58086 0.66 0.968723
Target:  5'- cAGGAGCgcgcgcCGUCGGGacgaggUGAgccaccuccGCGACCGa -3'
miRNA:   3'- -UCCUCGa-----GCAGCUCg-----ACU---------UGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 200303 0.66 0.968723
Target:  5'- uGGGGCUCGUCc-GCccucgggGAGCGGcuucCCGCc -3'
miRNA:   3'- uCCUCGAGCAGcuCGa------CUUGCU----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 118079 0.66 0.968723
Target:  5'- aGGGGGCggcuccggCGcCG-GCg--GCGACCGCg -3'
miRNA:   3'- -UCCUCGa-------GCaGCuCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 15299 0.66 0.965706
Target:  5'- cAGGAagagcGuCUCGUCGcccaGGCgggaggGGACGACgCGCg -3'
miRNA:   3'- -UCCU-----C-GAGCAGC----UCGa-----CUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 81611 0.66 0.965706
Target:  5'- gAGGuGCUCGUCG-GCc--AgGGCCGUc -3'
miRNA:   3'- -UCCuCGAGCAGCuCGacuUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 129506 0.66 0.965706
Target:  5'- uGGAGCUCGcUCcuGCUGAcuCGGCaGCu -3'
miRNA:   3'- uCCUCGAGC-AGcuCGACUu-GCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 28243 0.66 0.965706
Target:  5'- cGGGGC-CGUCGcGCcgcGAguACGACgGCg -3'
miRNA:   3'- uCCUCGaGCAGCuCGa--CU--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 38926 0.66 0.965706
Target:  5'- gAGGGGC-CGcCGcGGC-GGGCGcCCGCg -3'
miRNA:   3'- -UCCUCGaGCaGC-UCGaCUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130155 0.66 0.965706
Target:  5'- cGGGGCcCGgcggCGGGCcGGcccGCGACgGCg -3'
miRNA:   3'- uCCUCGaGCa---GCUCGaCU---UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 98321 0.66 0.965706
Target:  5'- gAGGGGCUCGgggccggggaCGGGgaGGGgGGCgGCc -3'
miRNA:   3'- -UCCUCGAGCa---------GCUCgaCUUgCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 103344 0.66 0.965706
Target:  5'- uGGGGGCgUCGaCGAGUcc-GgGGCCGCg -3'
miRNA:   3'- -UCCUCG-AGCaGCUCGacuUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 223798 0.66 0.965706
Target:  5'- cGGGGa-CGUCG-GCg--GCGACCGCc -3'
miRNA:   3'- uCCUCgaGCAGCuCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 145413 0.66 0.965394
Target:  5'- cGGGucuucuucGGCUCGUCcgccgcgGuGCUGGACGAgauccuCCGCc -3'
miRNA:   3'- -UCC--------UCGAGCAG-------CuCGACUUGCU------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 45274 0.66 0.965393
Target:  5'- cGGGGcgcucgcGCUCGUcucgCGGGUcGGACGgACCGCc -3'
miRNA:   3'- -UCCU-------CGAGCA----GCUCGaCUUGC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.