Results 21 - 40 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 191663 | 0.74 | 0.623548 |
Target: 5'- cGGAGaCguccgCGUCccgGGGCUGGGCGACCGg -3' miRNA: 3'- uCCUC-Ga----GCAG---CUCGACUUGCUGGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 189964 | 0.74 | 0.613646 |
Target: 5'- cGGAcCUCuUCGAGCUGcGgGACCGCg -3' miRNA: 3'- uCCUcGAGcAGCUCGACuUgCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 194531 | 0.74 | 0.633456 |
Target: 5'- cGGGAuaGCUCGUCGAuGCUGAG-GGCCa- -3' miRNA: 3'- -UCCU--CGAGCAGCU-CGACUUgCUGGcg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 123569 | 0.74 | 0.643363 |
Target: 5'- gGGGAGagCGaCGGGCUGGACGAcgggcCCGCg -3' miRNA: 3'- -UCCUCgaGCaGCUCGACUUGCU-----GGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 123238 | 0.74 | 0.643363 |
Target: 5'- -cGGGCUCGacuucuUCGAGCUcGACGACCGg -3' miRNA: 3'- ucCUCGAGC------AGCUCGAcUUGCUGGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 113324 | 0.73 | 0.682834 |
Target: 5'- gAGGGGCUCGUCGcaca-GGCGGCCGUu -3' miRNA: 3'- -UCCUCGAGCAGCucgacUUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 20322 | 0.73 | 0.701393 |
Target: 5'- gAGGAGCUCGUCGA-------GACCGCg -3' miRNA: 3'- -UCCUCGAGCAGCUcgacuugCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 74636 | 0.73 | 0.682834 |
Target: 5'- -cGAGC-CGUCGAcgccgcgacggGCgGGACGGCCGCg -3' miRNA: 3'- ucCUCGaGCAGCU-----------CGaCUUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 121845 | 0.73 | 0.702365 |
Target: 5'- gGGGAGgaCGgCGGGgaGGACGGCgGCg -3' miRNA: 3'- -UCCUCgaGCaGCUCgaCUUGCUGgCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 130553 | 0.73 | 0.673005 |
Target: 5'- cGGAuGCUCGUCGAGgaGuucgucguaGGCCGCc -3' miRNA: 3'- uCCU-CGAGCAGCUCgaCuug------CUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 209290 | 0.73 | 0.663146 |
Target: 5'- uGGAGCgcugCGUCaAGgaGAACGGCgGCg -3' miRNA: 3'- uCCUCGa---GCAGcUCgaCUUGCUGgCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 118799 | 0.73 | 0.673005 |
Target: 5'- cGGGAGCUgugggccccCGUCGuGgUcGGCGACCGCg -3' miRNA: 3'- -UCCUCGA---------GCAGCuCgAcUUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 91354 | 0.72 | 0.731226 |
Target: 5'- cAGcuGCUCGaCGGGCUGGACGAC-GCg -3' miRNA: 3'- -UCcuCGAGCaGCUCGACUUGCUGgCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 23098 | 0.72 | 0.712052 |
Target: 5'- cGGAGUUCGgcgugcggaugaUCGcGCUGGACGACCcCa -3' miRNA: 3'- uCCUCGAGC------------AGCuCGACUUGCUGGcG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 83694 | 0.72 | 0.750078 |
Target: 5'- -uGAcGgUCGUCGAGCccaGGGCGACCGUg -3' miRNA: 3'- ucCU-CgAGCAGCUCGa--CUUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 60907 | 0.72 | 0.759362 |
Target: 5'- ---cGCUCgGUCGAGCgGAcacCGACCGCg -3' miRNA: 3'- uccuCGAG-CAGCUCGaCUu--GCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 60676 | 0.72 | 0.759362 |
Target: 5'- cAGGuGCUCGagacguaccaguUCGcGCUGGugGACcCGCa -3' miRNA: 3'- -UCCuCGAGC------------AGCuCGACUugCUG-GCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 130121 | 0.72 | 0.759362 |
Target: 5'- aGGGAGCUgGaggccCGGGgUGGugucGCGGCCGCg -3' miRNA: 3'- -UCCUCGAgCa----GCUCgACU----UGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 221819 | 0.72 | 0.750078 |
Target: 5'- gAGGAGCUCGUCucGGCguc-CGACcCGCg -3' miRNA: 3'- -UCCUCGAGCAGc-UCGacuuGCUG-GCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 94627 | 0.72 | 0.731226 |
Target: 5'- cAGGc-CUCGUCGAGCgcggcgcGGACGACgGCc -3' miRNA: 3'- -UCCucGAGCAGCUCGa------CUUGCUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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