Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8960 | 3' | -56.6 | NC_002512.2 | + | 101708 | 0.68 | 0.866533 |
Target: 5'- cGGCCCgcucggCGACCuCGUCcccGGGCUCGu -3' miRNA: 3'- cUCGGGaa----GCUGGuGCAG---CUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 158642 | 0.68 | 0.859099 |
Target: 5'- cGAcCCCUUCGACCccgACGUCGAGgC-CAc -3' miRNA: 3'- -CUcGGGAAGCUGG---UGCAGCUC-GaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 112883 | 0.68 | 0.873763 |
Target: 5'- cGGCCCggCGuucucgucggucGCCGCGUCGcggaccAGCUCGAu -3' miRNA: 3'- cUCGGGaaGC------------UGGUGCAGC------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 226700 | 0.68 | 0.843646 |
Target: 5'- -cGCCCg-CGGCgGCGUCGAGCg--- -3' miRNA: 3'- cuCGGGaaGCUGgUGCAGCUCGaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 132198 | 0.67 | 0.89419 |
Target: 5'- cAGCUgcUCGACCGCGUUGAGgaCGc -3' miRNA: 3'- cUCGGgaAGCUGGUGCAGCUCgaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 119199 | 0.67 | 0.89419 |
Target: 5'- uGGCCCUgcggCGGCUGCG-CGAGCa--- -3' miRNA: 3'- cUCGGGAa---GCUGGUGCaGCUCGaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 31343 | 0.67 | 0.906713 |
Target: 5'- -cGCCCUggcCGGCUACGaccaCGAGCUgGAg -3' miRNA: 3'- cuCGGGAa--GCUGGUGCa---GCUCGAgUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 177867 | 0.67 | 0.906713 |
Target: 5'- cGGCCCauaGACCGCGgUCGAGUuauUCAc -3' miRNA: 3'- cUCGGGaagCUGGUGC-AGCUCG---AGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 64318 | 0.67 | 0.90911 |
Target: 5'- -uGCCCggCcACCACGUCGccgaccuggcaguccAGCUCGAu -3' miRNA: 3'- cuCGGGaaGcUGGUGCAGC---------------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 150945 | 0.67 | 0.887596 |
Target: 5'- aGGCuCCggCGGCCGCGgacucggaggCGGGCUCGc -3' miRNA: 3'- cUCG-GGaaGCUGGUGCa---------GCUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 188113 | 0.66 | 0.934043 |
Target: 5'- -cGCCCgcgUCGACUucgauuucaACGUCgucgccGAGCUCAu -3' miRNA: 3'- cuCGGGa--AGCUGG---------UGCAG------CUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 84497 | 0.66 | 0.918333 |
Target: 5'- gGAcCCCggaCG-CCGCGUCGGGCUCc- -3' miRNA: 3'- -CUcGGGaa-GCuGGUGCAGCUCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 101473 | 0.66 | 0.923799 |
Target: 5'- aGGGCuCCggCGACCcCGccacCGGGCUCGAg -3' miRNA: 3'- -CUCG-GGaaGCUGGuGCa---GCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 18930 | 0.66 | 0.929036 |
Target: 5'- aGGGCCCggaCGACCuCGUUGGcCUCGGg -3' miRNA: 3'- -CUCGGGaa-GCUGGuGCAGCUcGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 102231 | 0.66 | 0.934043 |
Target: 5'- cGGCCC-UCGACCGgcCGUCcGAGCg--- -3' miRNA: 3'- cUCGGGaAGCUGGU--GCAG-CUCGaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 15701 | 0.66 | 0.934043 |
Target: 5'- cGGGUCCUccuccgCGACgAUGaCGGGCUCGAc -3' miRNA: 3'- -CUCGGGAa-----GCUGgUGCaGCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 131619 | 0.66 | 0.929036 |
Target: 5'- cGGCCCgccCGGCCACGaaGAcGCUCu- -3' miRNA: 3'- cUCGGGaa-GCUGGUGCagCU-CGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 94622 | 0.66 | 0.934043 |
Target: 5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3' miRNA: 3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 112947 | 0.66 | 0.934043 |
Target: 5'- cGAGCCCgcgGACCGgGUCGAagUCGAa -3' miRNA: 3'- -CUCGGGaagCUGGUgCAGCUcgAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 117126 | 0.66 | 0.934043 |
Target: 5'- gGGGCCCcgUCGGCgGCGuUCGAGUcgcugCAGc -3' miRNA: 3'- -CUCGGGa-AGCUGgUGC-AGCUCGa----GUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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