Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8960 | 3' | -56.6 | NC_002512.2 | + | 101708 | 0.68 | 0.866533 |
Target: 5'- cGGCCCgcucggCGACCuCGUCcccGGGCUCGu -3' miRNA: 3'- cUCGGGaa----GCUGGuGCAG---CUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 127600 | 0.68 | 0.873763 |
Target: 5'- -cGCCCUggcggUCGACgCGCGcCGAGC-CGAg -3' miRNA: 3'- cuCGGGA-----AGCUG-GUGCaGCUCGaGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 112883 | 0.68 | 0.873763 |
Target: 5'- cGGCCCggCGuucucgucggucGCCGCGUCGcggaccAGCUCGAu -3' miRNA: 3'- cUCGGGaaGC------------UGGUGCAGC------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 172463 | 0.68 | 0.873763 |
Target: 5'- -cGCCCUggUCGACaACGUCaccuuucagGGGCUCAAc -3' miRNA: 3'- cuCGGGA--AGCUGgUGCAG---------CUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 150945 | 0.67 | 0.887596 |
Target: 5'- aGGCuCCggCGGCCGCGgacucggaggCGGGCUCGc -3' miRNA: 3'- cUCG-GGaaGCUGGUGCa---------GCUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 132198 | 0.67 | 0.89419 |
Target: 5'- cAGCUgcUCGACCGCGUUGAGgaCGc -3' miRNA: 3'- cUCGGgaAGCUGGUGCAGCUCgaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 119199 | 0.67 | 0.89419 |
Target: 5'- uGGCCCUgcggCGGCUGCG-CGAGCa--- -3' miRNA: 3'- cUCGGGAa---GCUGGUGCaGCUCGaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 177867 | 0.67 | 0.906713 |
Target: 5'- cGGCCCauaGACCGCGgUCGAGUuauUCAc -3' miRNA: 3'- cUCGGGaagCUGGUGC-AGCUCG---AGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 31343 | 0.67 | 0.906713 |
Target: 5'- -cGCCCUggcCGGCUACGaccaCGAGCUgGAg -3' miRNA: 3'- cuCGGGAa--GCUGGUGCa---GCUCGAgUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 64318 | 0.67 | 0.90911 |
Target: 5'- -uGCCCggCcACCACGUCGccgaccuggcaguccAGCUCGAu -3' miRNA: 3'- cuCGGGaaGcUGGUGCAGC---------------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 166443 | 0.66 | 0.912637 |
Target: 5'- -cGUCCUccgggggCGACgGCGcCGGGCUCGAg -3' miRNA: 3'- cuCGGGAa------GCUGgUGCaGCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 144562 | 0.66 | 0.912637 |
Target: 5'- aAGCUCcaaccggCGACCuACGUCGAGCggCAGg -3' miRNA: 3'- cUCGGGaa-----GCUGG-UGCAGCUCGa-GUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 72853 | 0.66 | 0.912637 |
Target: 5'- cGGGUCCUcgcUCcgGGCCGCGUCGccguugucgcggGGCUCGGg -3' miRNA: 3'- -CUCGGGA---AG--CUGGUGCAGC------------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 106776 | 0.66 | 0.918333 |
Target: 5'- cGGCCCg-CGGCaCugGUCGGGgUCGGg -3' miRNA: 3'- cUCGGGaaGCUG-GugCAGCUCgAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 98467 | 0.66 | 0.918333 |
Target: 5'- gGAGCCCgccgUC-ACCGUGUCGcAGCUCu- -3' miRNA: 3'- -CUCGGGa---AGcUGGUGCAGC-UCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 84497 | 0.66 | 0.918333 |
Target: 5'- gGAcCCCggaCG-CCGCGUCGGGCUCc- -3' miRNA: 3'- -CUcGGGaa-GCuGGUGCAGCUCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 26523 | 0.66 | 0.918333 |
Target: 5'- uGAGCaaccgCGGCCugGUCGgcAGCUCGc -3' miRNA: 3'- -CUCGggaa-GCUGGugCAGC--UCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 101473 | 0.66 | 0.923799 |
Target: 5'- aGGGCuCCggCGACCcCGccacCGGGCUCGAg -3' miRNA: 3'- -CUCG-GGaaGCUGGuGCa---GCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 121609 | 0.66 | 0.923799 |
Target: 5'- aAGCCgaaCGACCcgAUGUCGAGCUCc- -3' miRNA: 3'- cUCGGgaaGCUGG--UGCAGCUCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 106623 | 0.66 | 0.925922 |
Target: 5'- -uGUCCUcCGACaugcggcgccgguCGUCGAGCUCGAa -3' miRNA: 3'- cuCGGGAaGCUGgu-----------GCAGCUCGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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