Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8960 | 3' | -56.6 | NC_002512.2 | + | 31343 | 0.67 | 0.906713 |
Target: 5'- -cGCCCUggcCGGCUACGaccaCGAGCUgGAg -3' miRNA: 3'- cuCGGGAa--GCUGGUGCa---GCUCGAgUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 119199 | 0.67 | 0.89419 |
Target: 5'- uGGCCCUgcggCGGCUGCG-CGAGCa--- -3' miRNA: 3'- cUCGGGAa---GCUGGUGCaGCUCGaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 132198 | 0.67 | 0.89419 |
Target: 5'- cAGCUgcUCGACCGCGUUGAGgaCGc -3' miRNA: 3'- cUCGGgaAGCUGGUGCAGCUCgaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 150945 | 0.67 | 0.887596 |
Target: 5'- aGGCuCCggCGGCCGCGgacucggaggCGGGCUCGc -3' miRNA: 3'- cUCG-GGaaGCUGGUGCa---------GCUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 112883 | 0.68 | 0.873763 |
Target: 5'- cGGCCCggCGuucucgucggucGCCGCGUCGcggaccAGCUCGAu -3' miRNA: 3'- cUCGGGaaGC------------UGGUGCAGC------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 172463 | 0.68 | 0.873763 |
Target: 5'- -cGCCCUggUCGACaACGUCaccuuucagGGGCUCAAc -3' miRNA: 3'- cuCGGGA--AGCUGgUGCAG---------CUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 127600 | 0.68 | 0.873763 |
Target: 5'- -cGCCCUggcggUCGACgCGCGcCGAGC-CGAg -3' miRNA: 3'- cuCGGGA-----AGCUG-GUGCaGCUCGaGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 21653 | 0.68 | 0.866533 |
Target: 5'- cGGGCCUUcuccUCGuCCAUGUCgGAGaCUCAAa -3' miRNA: 3'- -CUCGGGA----AGCuGGUGCAG-CUC-GAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 101708 | 0.68 | 0.866533 |
Target: 5'- cGGCCCgcucggCGACCuCGUCcccGGGCUCGu -3' miRNA: 3'- cUCGGGaa----GCUGGuGCAG---CUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 158642 | 0.68 | 0.859099 |
Target: 5'- cGAcCCCUUCGACCccgACGUCGAGgC-CAc -3' miRNA: 3'- -CUcGGGAAGCUGG---UGCAGCUC-GaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 130258 | 0.68 | 0.851468 |
Target: 5'- cGGGCCCUccgagggcgaCGACCGCGaCGAGCgCGGg -3' miRNA: 3'- -CUCGGGAa---------GCUGGUGCaGCUCGaGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 99266 | 0.68 | 0.851468 |
Target: 5'- cGAGUCCUUCugUCGCGcCGGGCUCu- -3' miRNA: 3'- -CUCGGGAAGcuGGUGCaGCUCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 24909 | 0.68 | 0.851468 |
Target: 5'- cGGUCCccgUCGcccGCgGCGUCGGGCUCGg -3' miRNA: 3'- cUCGGGa--AGC---UGgUGCAGCUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 36436 | 0.68 | 0.844436 |
Target: 5'- aGGGCCCgcucccgccaccggCGGCCGCGgUCGcGCUCGu -3' miRNA: 3'- -CUCGGGaa------------GCUGGUGC-AGCuCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 226700 | 0.68 | 0.843646 |
Target: 5'- -cGCCCg-CGGCgGCGUCGAGCg--- -3' miRNA: 3'- cuCGGGaaGCUGgUGCAGCUCGaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 39811 | 0.69 | 0.827454 |
Target: 5'- cGAGCCCgcugacCGGCCGCGgCcAGCUCGu -3' miRNA: 3'- -CUCGGGaa----GCUGGUGCaGcUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 13558 | 0.69 | 0.827454 |
Target: 5'- cGAGCCgc-CGACCGCGUCgGGGCcgCAGa -3' miRNA: 3'- -CUCGGgaaGCUGGUGCAG-CUCGa-GUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 117382 | 0.69 | 0.819099 |
Target: 5'- -cGCCCUucUCGAUCuacuCGUCGGGCUg-- -3' miRNA: 3'- cuCGGGA--AGCUGGu---GCAGCUCGAguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 21970 | 0.7 | 0.775028 |
Target: 5'- cGGGCCCgUUCGAgcuCCGCGUCGAGg---- -3' miRNA: 3'- -CUCGGG-AAGCU---GGUGCAGCUCgaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 193187 | 0.7 | 0.756481 |
Target: 5'- -cGCCuucuuCUUCGACCGCGUCuucGGCUCGc -3' miRNA: 3'- cuCGG-----GAAGCUGGUGCAGc--UCGAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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