Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8960 | 3' | -56.6 | NC_002512.2 | + | 131619 | 0.66 | 0.929036 |
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Target: 5'- cGGCCCgccCGGCCACGaaGAcGCUCu- -3' miRNA: 3'- cUCGGGaa-GCUGGUGCagCU-CGAGuu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 18930 | 0.66 | 0.929036 |
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Target: 5'- aGGGCCCggaCGACCuCGUUGGcCUCGGg -3' miRNA: 3'- -CUCGGGaa-GCUGGuGCAGCUcGAGUU- -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 102231 | 0.66 | 0.934043 |
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Target: 5'- cGGCCC-UCGACCGgcCGUCcGAGCg--- -3' miRNA: 3'- cUCGGGaAGCUGGU--GCAG-CUCGaguu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 188113 | 0.66 | 0.934043 |
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Target: 5'- -cGCCCgcgUCGACUucgauuucaACGUCgucgccGAGCUCAu -3' miRNA: 3'- cuCGGGa--AGCUGG---------UGCAG------CUCGAGUu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 117126 | 0.66 | 0.934043 |
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Target: 5'- gGGGCCCcgUCGGCgGCGuUCGAGUcgcugCAGc -3' miRNA: 3'- -CUCGGGa-AGCUGgUGC-AGCUCGa----GUU- -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 112947 | 0.66 | 0.934043 |
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Target: 5'- cGAGCCCgcgGACCGgGUCGAagUCGAa -3' miRNA: 3'- -CUCGGGaagCUGGUgCAGCUcgAGUU- -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 94622 | 0.66 | 0.934043 |
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Target: 5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3' miRNA: 3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 15701 | 0.66 | 0.934043 |
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Target: 5'- cGGGUCCUccuccgCGACgAUGaCGGGCUCGAc -3' miRNA: 3'- -CUCGGGAa-----GCUGgUGCaGCUCGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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