Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8960 | 3' | -56.6 | NC_002512.2 | + | 94622 | 0.66 | 0.934043 |
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Target: 5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3' miRNA: 3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 131619 | 0.66 | 0.929036 |
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Target: 5'- cGGCCCgccCGGCCACGaaGAcGCUCu- -3' miRNA: 3'- cUCGGGaa-GCUGGUGCagCU-CGAGuu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 106623 | 0.66 | 0.925922 |
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Target: 5'- -uGUCCUcCGACaugcggcgccgguCGUCGAGCUCGAa -3' miRNA: 3'- cuCGGGAaGCUGgu-----------GCAGCUCGAGUU- -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 121609 | 0.66 | 0.923799 |
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Target: 5'- aAGCCgaaCGACCcgAUGUCGAGCUCc- -3' miRNA: 3'- cUCGGgaaGCUGG--UGCAGCUCGAGuu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 166443 | 0.66 | 0.912637 |
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Target: 5'- -cGUCCUccgggggCGACgGCGcCGGGCUCGAg -3' miRNA: 3'- cuCGGGAa------GCUGgUGCaGCUCGAGUU- -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 144562 | 0.66 | 0.912637 |
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Target: 5'- aAGCUCcaaccggCGACCuACGUCGAGCggCAGg -3' miRNA: 3'- cUCGGGaa-----GCUGG-UGCAGCUCGa-GUU- -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 132198 | 0.67 | 0.89419 |
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Target: 5'- cAGCUgcUCGACCGCGUUGAGgaCGc -3' miRNA: 3'- cUCGGgaAGCUGGUGCAGCUCgaGUu -5' |
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| 8960 | 3' | -56.6 | NC_002512.2 | + | 210735 | 1.06 | 0.005247 |
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Target: 5'- cGAGCCCUUCGACCACGUCGAGCUCAAg -3' miRNA: 3'- -CUCGGGAAGCUGGUGCAGCUCGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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