miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 3' -56.6 NC_002512.2 + 119199 0.67 0.89419
Target:  5'- uGGCCCUgcggCGGCUGCG-CGAGCa--- -3'
miRNA:   3'- cUCGGGAa---GCUGGUGCaGCUCGaguu -5'
8960 3' -56.6 NC_002512.2 + 117382 0.69 0.819099
Target:  5'- -cGCCCUucUCGAUCuacuCGUCGGGCUg-- -3'
miRNA:   3'- cuCGGGA--AGCUGGu---GCAGCUCGAguu -5'
8960 3' -56.6 NC_002512.2 + 117126 0.66 0.934043
Target:  5'- gGGGCCCcgUCGGCgGCGuUCGAGUcgcugCAGc -3'
miRNA:   3'- -CUCGGGa-AGCUGgUGC-AGCUCGa----GUU- -5'
8960 3' -56.6 NC_002512.2 + 112947 0.66 0.934043
Target:  5'- cGAGCCCgcgGACCGgGUCGAagUCGAa -3'
miRNA:   3'- -CUCGGGaagCUGGUgCAGCUcgAGUU- -5'
8960 3' -56.6 NC_002512.2 + 112883 0.68 0.873763
Target:  5'- cGGCCCggCGuucucgucggucGCCGCGUCGcggaccAGCUCGAu -3'
miRNA:   3'- cUCGGGaaGC------------UGGUGCAGC------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 106776 0.66 0.918333
Target:  5'- cGGCCCg-CGGCaCugGUCGGGgUCGGg -3'
miRNA:   3'- cUCGGGaaGCUG-GugCAGCUCgAGUU- -5'
8960 3' -56.6 NC_002512.2 + 106623 0.66 0.925922
Target:  5'- -uGUCCUcCGACaugcggcgccgguCGUCGAGCUCGAa -3'
miRNA:   3'- cuCGGGAaGCUGgu-----------GCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 102231 0.66 0.934043
Target:  5'- cGGCCC-UCGACCGgcCGUCcGAGCg--- -3'
miRNA:   3'- cUCGGGaAGCUGGU--GCAG-CUCGaguu -5'
8960 3' -56.6 NC_002512.2 + 101708 0.68 0.866533
Target:  5'- cGGCCCgcucggCGACCuCGUCcccGGGCUCGu -3'
miRNA:   3'- cUCGGGaa----GCUGGuGCAG---CUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 101473 0.66 0.923799
Target:  5'- aGGGCuCCggCGACCcCGccacCGGGCUCGAg -3'
miRNA:   3'- -CUCG-GGaaGCUGGuGCa---GCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 99266 0.68 0.851468
Target:  5'- cGAGUCCUUCugUCGCGcCGGGCUCu- -3'
miRNA:   3'- -CUCGGGAAGcuGGUGCaGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 98467 0.66 0.918333
Target:  5'- gGAGCCCgccgUC-ACCGUGUCGcAGCUCu- -3'
miRNA:   3'- -CUCGGGa---AGcUGGUGCAGC-UCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 94622 0.66 0.934043
Target:  5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3'
miRNA:   3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5'
8960 3' -56.6 NC_002512.2 + 89314 0.73 0.608655
Target:  5'- -cGCCCUccgucUCGACCAgGUCGgagAGCUCGu -3'
miRNA:   3'- cuCGGGA-----AGCUGGUgCAGC---UCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 84497 0.66 0.918333
Target:  5'- gGAcCCCggaCG-CCGCGUCGGGCUCc- -3'
miRNA:   3'- -CUcGGGaa-GCuGGUGCAGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 72853 0.66 0.912637
Target:  5'- cGGGUCCUcgcUCcgGGCCGCGUCGccguugucgcggGGCUCGGg -3'
miRNA:   3'- -CUCGGGA---AG--CUGGUGCAGC------------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 64318 0.67 0.90911
Target:  5'- -uGCCCggCcACCACGUCGccgaccuggcaguccAGCUCGAu -3'
miRNA:   3'- cuCGGGaaGcUGGUGCAGC---------------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 39811 0.69 0.827454
Target:  5'- cGAGCCCgcugacCGGCCGCGgCcAGCUCGu -3'
miRNA:   3'- -CUCGGGaa----GCUGGUGCaGcUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 36436 0.68 0.844436
Target:  5'- aGGGCCCgcucccgccaccggCGGCCGCGgUCGcGCUCGu -3'
miRNA:   3'- -CUCGGGaa------------GCUGGUGC-AGCuCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 31343 0.67 0.906713
Target:  5'- -cGCCCUggcCGGCUACGaccaCGAGCUgGAg -3'
miRNA:   3'- cuCGGGAa--GCUGGUGCa---GCUCGAgUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.