miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 95751 0.68 0.951073
Target:  5'- ----cGGGACGCGCGC--CGCgACGGc -3'
miRNA:   3'- agaguUCUUGCGCGCGaaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 95867 0.67 0.979677
Target:  5'- cUCcCAGGGcCGCGCGCcgaggaucucgaggUCGCC-CGGc -3'
miRNA:   3'- -AGaGUUCUuGCGCGCGa-------------AGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 97142 0.69 0.92295
Target:  5'- cCUgCGGGAcgACGcCGCGCUgCGCCuGCGGc -3'
miRNA:   3'- aGA-GUUCU--UGC-GCGCGAaGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 97393 0.67 0.968468
Target:  5'- --aCGGGGGCGgGCGCgaCGaCGCGGa -3'
miRNA:   3'- agaGUUCUUGCgCGCGaaGCgGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 97424 0.67 0.978802
Target:  5'- ---gGAGAGaCGCGCGCUccccggaccCGCCGcCGGg -3'
miRNA:   3'- agagUUCUU-GCGCGCGAa--------GCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 97748 0.69 0.93803
Target:  5'- cCUCGAGGugGCGguCGUcUUGCuCGCGGc -3'
miRNA:   3'- aGAGUUCUugCGC--GCGaAGCG-GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 98209 0.66 0.984722
Target:  5'- uUCUCGGGGACcuucccgaGCagucuccggGUGCUcUCGUCGCGGa -3'
miRNA:   3'- -AGAGUUCUUG--------CG---------CGCGA-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 99782 0.77 0.568675
Target:  5'- cCUCAAGGGCGCGCcCUUCacucgGCCGuCGGg -3'
miRNA:   3'- aGAGUUCUUGCGCGcGAAG-----CGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 100334 0.68 0.946949
Target:  5'- cCUCGGGAcugGCGgGCGCcg-GCCACGc -3'
miRNA:   3'- aGAGUUCU---UGCgCGCGaagCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 101018 0.66 0.985901
Target:  5'- cCUCAgcaggcgcagcaccAGGGCcCGCGCggCGCCcgaGCGGu -3'
miRNA:   3'- aGAGU--------------UCUUGcGCGCGaaGCGG---UGCC- -5'
8960 5' -54.1 NC_002512.2 + 101183 0.68 0.961119
Target:  5'- gUUCAGGAugGUGUuguccgagacgccgGCgUUCGCCAgGGu -3'
miRNA:   3'- aGAGUUCUugCGCG--------------CG-AAGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 101645 0.71 0.850547
Target:  5'- gCUCGaggGGAGCGCG-GCg--GCCGCGGa -3'
miRNA:   3'- aGAGU---UCUUGCGCgCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 102278 0.69 0.93803
Target:  5'- aUCUCGGcucGGCGCGCGUcgacCGCCAgGGc -3'
miRNA:   3'- -AGAGUUc--UUGCGCGCGaa--GCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 102469 0.68 0.954977
Target:  5'- ---gAGGAGgGCGCGCc-CGUCGCGGu -3'
miRNA:   3'- agagUUCUUgCGCGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 102736 0.66 0.982909
Target:  5'- cUUCGacccGGAGCGCGCGCc---CUACGGa -3'
miRNA:   3'- aGAGU----UCUUGCGCGCGaagcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 103095 0.71 0.879863
Target:  5'- aUCcCGGGGACGgGCGCggcacgcgUCGCCGCc- -3'
miRNA:   3'- -AGaGUUCUUGCgCGCGa-------AGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 103146 0.69 0.92295
Target:  5'- gUCUCGGGccaagaGGCGaCGCGCcgCGCC-CGGc -3'
miRNA:   3'- -AGAGUUC------UUGC-GCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 103463 0.67 0.974006
Target:  5'- gUC-CGAGGACGCG-GCUcgggUCucggcggcgGCCGCGGa -3'
miRNA:   3'- -AGaGUUCUUGCGCgCGA----AG---------CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 105930 0.68 0.958664
Target:  5'- cCUCGGGGAgGCGgacuCGU-UCGUCACGGu -3'
miRNA:   3'- aGAGUUCUUgCGC----GCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 107591 0.67 0.968468
Target:  5'- aUCUCGucGACGUGCGgcUCGCUgACGGg -3'
miRNA:   3'- -AGAGUucUUGCGCGCgaAGCGG-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.