miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 77077 0.66 0.987905
Target:  5'- gCUCGc---CGCcCGCcgUCGCCGCGGa -3'
miRNA:   3'- aGAGUucuuGCGcGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 77554 0.66 0.986385
Target:  5'- -gUCGcGGACG-GCGggUCGCCcACGGg -3'
miRNA:   3'- agAGUuCUUGCgCGCgaAGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 78866 0.81 0.362361
Target:  5'- cCUCGAGGugGCuCGCgUCGCCAUGGa -3'
miRNA:   3'- aGAGUUCUugCGcGCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 79054 0.81 0.378194
Target:  5'- aUCUCGGGGaaGCGCgGCGCggUCGUCACGGc -3'
miRNA:   3'- -AGAGUUCU--UGCG-CGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 80714 0.68 0.946949
Target:  5'- --gCGAGGGCGCGCGgg-C-CCGCGGg -3'
miRNA:   3'- agaGUUCUUGCGCGCgaaGcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 80806 0.73 0.774231
Target:  5'- ---gAGGAGCGCGCGCg-CGCCuCGGc -3'
miRNA:   3'- agagUUCUUGCGCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 81999 0.71 0.858174
Target:  5'- gUCUCGGGGGCGguCGCgGCgagccgUCGCC-CGGg -3'
miRNA:   3'- -AGAGUUCUUGC--GCG-CGa-----AGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 82033 0.68 0.958664
Target:  5'- -gUCGGGGuCGCGCcgGCggcggUCGCgGCGGg -3'
miRNA:   3'- agAGUUCUuGCGCG--CGa----AGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 82083 0.68 0.950671
Target:  5'- cUCUCGAGccacgGGCGCGCGUaagcuuuUUCcgaGCCGCGa -3'
miRNA:   3'- -AGAGUUC-----UUGCGCGCG-------AAG---CGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 82605 0.7 0.89966
Target:  5'- --cCGGGAACGaCGCGCggCGUCcCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 84307 0.66 0.983097
Target:  5'- -aUCAGGuaguugcggcgcguCGCGCGCcgcagcgUCGCCGCGu -3'
miRNA:   3'- agAGUUCuu------------GCGCGCGa------AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 91573 0.67 0.970211
Target:  5'- cUCUCGcggauccgcuacGAGCGCGCGCggcaccacgaGCUGCGGa -3'
miRNA:   3'- -AGAGUu-----------CUUGCGCGCGaag-------CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 92328 0.67 0.974006
Target:  5'- gUCUC-GGGGCGguuucCGCGaccgaacccgUCGCCGCGGa -3'
miRNA:   3'- -AGAGuUCUUGC-----GCGCga--------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 92517 0.66 0.986385
Target:  5'- uUC-CGGGAGacCGCGCGgaUCuacccgGCCGCGGc -3'
miRNA:   3'- -AGaGUUCUU--GCGCGCgaAG------CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 93215 0.67 0.978802
Target:  5'- gUCUCcauGAcCuCGCGCUcccUCGUCACGGc -3'
miRNA:   3'- -AGAGuu-CUuGcGCGCGA---AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 93972 0.69 0.928205
Target:  5'- aCUCAGG-ACGUGuCGCUgcgCGuCCGCGa -3'
miRNA:   3'- aGAGUUCuUGCGC-GCGAa--GC-GGUGCc -5'
8960 5' -54.1 NC_002512.2 + 94377 0.68 0.951073
Target:  5'- cCUCAGG-ACGUGCGUg--GCCAUGa -3'
miRNA:   3'- aGAGUUCuUGCGCGCGaagCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 94787 0.66 0.980938
Target:  5'- uUCUCcAGGGCGCGCaCgaCGCggagaCGCGGg -3'
miRNA:   3'- -AGAGuUCUUGCGCGcGaaGCG-----GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 95004 0.68 0.954977
Target:  5'- ---uGAGGACGCGuCGCgUCGUC-CGGg -3'
miRNA:   3'- agagUUCUUGCGC-GCGaAGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 95671 0.73 0.755731
Target:  5'- cUCUCGuGAGCGCGCGUc-CGCCgggccuccgGCGGg -3'
miRNA:   3'- -AGAGUuCUUGCGCGCGaaGCGG---------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.