miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 33639 0.76 0.618378
Target:  5'- --gCGAGAgGCGCGCGCgggCGCgGCGGa -3'
miRNA:   3'- agaGUUCU-UGCGCGCGaa-GCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 129429 0.76 0.598419
Target:  5'- --cCGAGAACGCGCuCUUCGCCGucgccCGGa -3'
miRNA:   3'- agaGUUCUUGCGCGcGAAGCGGU-----GCC- -5'
8960 5' -54.1 NC_002512.2 + 99782 0.77 0.568675
Target:  5'- cCUCAAGGGCGCGCcCUUCacucgGCCGuCGGg -3'
miRNA:   3'- aGAGUUCUUGCGCGcGAAG-----CGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 30416 0.77 0.558838
Target:  5'- --aCGGGGACGCGgGCgUCGUCGCGGc -3'
miRNA:   3'- agaGUUCUUGCGCgCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 79054 0.81 0.378194
Target:  5'- aUCUCGGGGaaGCGCgGCGCggUCGUCACGGc -3'
miRNA:   3'- -AGAGUUCU--UGCG-CGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 101645 0.71 0.850547
Target:  5'- gCUCGaggGGAGCGCG-GCg--GCCGCGGa -3'
miRNA:   3'- aGAGU---UCUUGCGCgCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 81999 0.71 0.858174
Target:  5'- gUCUCGGGGGCGguCGCgGCgagccgUCGCC-CGGg -3'
miRNA:   3'- -AGAGUUCUUGC--GCG-CGa-----AGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 97748 0.69 0.93803
Target:  5'- cCUCGAGGugGCGguCGUcUUGCuCGCGGc -3'
miRNA:   3'- aGAGUUCUugCGC--GCGaAGCG-GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 45384 0.69 0.933232
Target:  5'- --aCGAGGACGCGgGCcgggacugUCGCUcguGCGGg -3'
miRNA:   3'- agaGUUCUUGCGCgCGa-------AGCGG---UGCC- -5'
8960 5' -54.1 NC_002512.2 + 129697 0.69 0.928205
Target:  5'- gCUCAAGGAgGCGC---UCGCCACcgaGGa -3'
miRNA:   3'- aGAGUUCUUgCGCGcgaAGCGGUG---CC- -5'
8960 5' -54.1 NC_002512.2 + 103146 0.69 0.92295
Target:  5'- gUCUCGGGccaagaGGCGaCGCGCcgCGCC-CGGc -3'
miRNA:   3'- -AGAGUUC------UUGC-GCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 97142 0.69 0.92295
Target:  5'- cCUgCGGGAcgACGcCGCGCUgCGCCuGCGGc -3'
miRNA:   3'- aGA-GUUCU--UGC-GCGCGAaGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 13365 0.69 0.92295
Target:  5'- aCUCGGGcGCGUuCGUggUGCCGCGGu -3'
miRNA:   3'- aGAGUUCuUGCGcGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 120346 0.7 0.917467
Target:  5'- uUCUcCGAGAACGCGUggauguGCUccUCGCaCACGu -3'
miRNA:   3'- -AGA-GUUCUUGCGCG------CGA--AGCG-GUGCc -5'
8960 5' -54.1 NC_002512.2 + 41371 0.7 0.90582
Target:  5'- -gUUGAGGACGcCGCGCUcguaggacaccUCGUUGCGGg -3'
miRNA:   3'- agAGUUCUUGC-GCGCGA-----------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 27704 0.7 0.89966
Target:  5'- -aUCcGGAACGCGCGUUcuccCGUCACGa -3'
miRNA:   3'- agAGuUCUUGCGCGCGAa---GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 82605 0.7 0.89966
Target:  5'- --cCGGGAACGaCGCGCggCGUCcCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 68897 0.7 0.893278
Target:  5'- cCUCGccGGGGCGguCGUGCUgcuggcCGCCGCGGc -3'
miRNA:   3'- aGAGU--UCUUGC--GCGCGAa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 111846 0.7 0.893278
Target:  5'- -gUCGuAGAGCGC-CGCcgUCGCCGCGu -3'
miRNA:   3'- agAGU-UCUUGCGcGCGa-AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 103095 0.71 0.879863
Target:  5'- aUCcCGGGGACGgGCGCggcacgcgUCGCCGCc- -3'
miRNA:   3'- -AGaGUUCUUGCgCGCGa-------AGCGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.