miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 81999 0.71 0.858174
Target:  5'- gUCUCGGGGGCGguCGCgGCgagccgUCGCC-CGGg -3'
miRNA:   3'- -AGAGUUCUUGC--GCG-CGa-----AGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 222397 0.71 0.865606
Target:  5'- cCUCAuGGAGCGcCGCgGCUUCGgCGgGGg -3'
miRNA:   3'- aGAGU-UCUUGC-GCG-CGAAGCgGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 206864 0.71 0.872837
Target:  5'- cUUCGGGGGCG-GCGCcgagcUCGCCgACGGg -3'
miRNA:   3'- aGAGUUCUUGCgCGCGa----AGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 225709 0.71 0.872837
Target:  5'- cCUCAGGAuguguCGCcCGCga-GCCGCGGc -3'
miRNA:   3'- aGAGUUCUu----GCGcGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 213997 0.71 0.872837
Target:  5'- uUCUCGaaGGGugGCGCGa--CGCC-CGGa -3'
miRNA:   3'- -AGAGU--UCUugCGCGCgaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 103095 0.71 0.879863
Target:  5'- aUCcCGGGGACGgGCGCggcacgcgUCGCCGCc- -3'
miRNA:   3'- -AGaGUUCUUGCgCGCGa-------AGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 157791 0.71 0.879863
Target:  5'- -aUCAAGAACcgggcgGUGUGCaggUCGCUGCGGg -3'
miRNA:   3'- agAGUUCUUG------CGCGCGa--AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 226484 0.71 0.879863
Target:  5'- --cCGGGGccCGgGCGCUccccUCGCCGCGGg -3'
miRNA:   3'- agaGUUCUu-GCgCGCGA----AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 147161 0.7 0.884656
Target:  5'- cCUCGcaguauuagacgccGGAACGCGgGCccgCGCCGCGc -3'
miRNA:   3'- aGAGU--------------UCUUGCGCgCGaa-GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 180643 0.7 0.886678
Target:  5'- uUCUCuAGggUGCG-GCaggcCGCCGCGGu -3'
miRNA:   3'- -AGAGuUCuuGCGCgCGaa--GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 111846 0.7 0.893278
Target:  5'- -gUCGuAGAGCGC-CGCcgUCGCCGCGu -3'
miRNA:   3'- agAGU-UCUUGCGcGCGa-AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 68897 0.7 0.893278
Target:  5'- cCUCGccGGGGCGguCGUGCUgcuggcCGCCGCGGc -3'
miRNA:   3'- aGAGU--UCUUGC--GCGCGAa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 227423 0.7 0.893278
Target:  5'- cUCUCGcGcGCGgGCGCgg-GCCGCGGu -3'
miRNA:   3'- -AGAGUuCuUGCgCGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 27704 0.7 0.89966
Target:  5'- -aUCcGGAACGCGCGUUcuccCGUCACGa -3'
miRNA:   3'- agAGuUCUUGCGCGCGAa---GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 82605 0.7 0.89966
Target:  5'- --cCGGGAACGaCGCGCggCGUCcCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 165254 0.7 0.90582
Target:  5'- cCUCGcGGACGCGuCGCggaGCCcCGGa -3'
miRNA:   3'- aGAGUuCUUGCGC-GCGaagCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 41371 0.7 0.90582
Target:  5'- -gUUGAGGACGcCGCGCUcguaggacaccUCGUUGCGGg -3'
miRNA:   3'- agAGUUCUUGC-GCGCGA-----------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 198027 0.7 0.908222
Target:  5'- ---gAGGGACGCGCGCgcgaggggacgcggUCGUCACaGGg -3'
miRNA:   3'- agagUUCUUGCGCGCGa-------------AGCGGUG-CC- -5'
8960 5' -54.1 NC_002512.2 + 119979 0.7 0.911757
Target:  5'- -----cGAACGCGCGCgaCGCCGacgaGGg -3'
miRNA:   3'- agaguuCUUGCGCGCGaaGCGGUg---CC- -5'
8960 5' -54.1 NC_002512.2 + 128750 0.7 0.917467
Target:  5'- gCUCAAGGucuACGaCGCGCUgcgcgagcgcaCGCCGCGc -3'
miRNA:   3'- aGAGUUCU---UGC-GCGCGAa----------GCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.