miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 110841 0.66 0.980938
Target:  5'- -aUCAGGAGCaG-GCGCUgguugaucuccgUCGCCAgCGGc -3'
miRNA:   3'- agAGUUCUUG-CgCGCGA------------AGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 178238 0.67 0.979677
Target:  5'- gUCUcCGGGGACG-GCGCggucuccggguccgUCGCCAUGu -3'
miRNA:   3'- -AGA-GUUCUUGCgCGCGa-------------AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 95867 0.67 0.979677
Target:  5'- cUCcCAGGGcCGCGCGCcgaggaucucgaggUCGCC-CGGc -3'
miRNA:   3'- -AGaGUUCUuGCGCGCGa-------------AGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 2093 0.67 0.978802
Target:  5'- --gCGGGAGCGgGCGgUaCGgCCGCGGc -3'
miRNA:   3'- agaGUUCUUGCgCGCgAaGC-GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 75505 0.67 0.978802
Target:  5'- --aCGGGGGCGgGacUUUCGCCGCGGa -3'
miRNA:   3'- agaGUUCUUGCgCgcGAAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 24705 0.67 0.978802
Target:  5'- -gUCGAGGACGCGgGCgagggagaCGCgGCGu -3'
miRNA:   3'- agAGUUCUUGCGCgCGaa------GCGgUGCc -5'
8960 5' -54.1 NC_002512.2 + 209953 0.67 0.978802
Target:  5'- gCUCGAccGGGCGCGgGUccucaaggUCGCCAaCGGc -3'
miRNA:   3'- aGAGUU--CUUGCGCgCGa-------AGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 149299 0.67 0.978802
Target:  5'- --gCGAGAucgucgaccgccGCGCGgGC-UCGCCGcCGGa -3'
miRNA:   3'- agaGUUCU------------UGCGCgCGaAGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 93215 0.67 0.978802
Target:  5'- gUCUCcauGAcCuCGCGCUcccUCGUCACGGc -3'
miRNA:   3'- -AGAGuu-CUuGcGCGCGA---AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 97424 0.67 0.978802
Target:  5'- ---gGAGAGaCGCGCGCUccccggaccCGCCGcCGGg -3'
miRNA:   3'- agagUUCUU-GCGCGCGAa--------GCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 11789 0.67 0.978802
Target:  5'- --cCGGGcgcGACGCcCGCUUCcCCACGGa -3'
miRNA:   3'- agaGUUC---UUGCGcGCGAAGcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 190948 0.67 0.976494
Target:  5'- --cCGGGcgcACGCGgGCgccCGCCGCGGc -3'
miRNA:   3'- agaGUUCu--UGCGCgCGaa-GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 111577 0.67 0.976494
Target:  5'- cUCUCGucGucCGCGCGCUcgGCC-CGGa -3'
miRNA:   3'- -AGAGUu-CuuGCGCGCGAagCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 156565 0.67 0.976494
Target:  5'- ---gGAGAGCcugcugcgcucgGUGCGCUUCGUCAgCGGc -3'
miRNA:   3'- agagUUCUUG------------CGCGCGAAGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 40025 0.67 0.975023
Target:  5'- gUCUCc--GACGCGCgacgagguugcggacGUUUCGCCcGCGGg -3'
miRNA:   3'- -AGAGuucUUGCGCG---------------CGAAGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 92328 0.67 0.974006
Target:  5'- gUCUC-GGGGCGguuucCGCGaccgaacccgUCGCCGCGGa -3'
miRNA:   3'- -AGAGuUCUUGC-----GCGCga--------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 59995 0.67 0.974006
Target:  5'- -aUCAAGAagGCGaaCGCGCUgaagaaGCUGCGGa -3'
miRNA:   3'- agAGUUCU--UGC--GCGCGAag----CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 30265 0.67 0.974006
Target:  5'- --cCGcGGACGCGCGgagccggCGCCAUGGa -3'
miRNA:   3'- agaGUuCUUGCGCGCgaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 11262 0.67 0.974006
Target:  5'- --aCAGGGucccgACGCGCGUccUUCGaguCCGCGGg -3'
miRNA:   3'- agaGUUCU-----UGCGCGCG--AAGC---GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 18540 0.67 0.974006
Target:  5'- -gUCAGGc-CGCGCGCgucccccagCGCC-CGGg -3'
miRNA:   3'- agAGUUCuuGCGCGCGaa-------GCGGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.