miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 200704 0.67 0.974006
Target:  5'- gUCUCGGGuGGCGuCGgGCUgcCGCCcgGCGGu -3'
miRNA:   3'- -AGAGUUC-UUGC-GCgCGAa-GCGG--UGCC- -5'
8960 5' -54.1 NC_002512.2 + 11262 0.67 0.974006
Target:  5'- --aCAGGGucccgACGCGCGUccUUCGaguCCGCGGg -3'
miRNA:   3'- agaGUUCU-----UGCGCGCG--AAGC---GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 18540 0.67 0.974006
Target:  5'- -gUCAGGc-CGCGCGCgucccccagCGCC-CGGg -3'
miRNA:   3'- agAGUUCuuGCGCGCGaa-------GCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 30265 0.67 0.974006
Target:  5'- --cCGcGGACGCGCGgagccggCGCCAUGGa -3'
miRNA:   3'- agaGUuCUUGCGCGCgaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 119927 0.67 0.971333
Target:  5'- aUCUCGAGcGCgGCGuCGCcccCGCaCGCGGu -3'
miRNA:   3'- -AGAGUUCuUG-CGC-GCGaa-GCG-GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 26737 0.67 0.971333
Target:  5'- -gUCGccGGCGC-CGCUguaCGCCACGGu -3'
miRNA:   3'- agAGUucUUGCGcGCGAa--GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 71377 0.67 0.971333
Target:  5'- ---aGGGAGCGCugGCGCag-GCCGCGGa -3'
miRNA:   3'- agagUUCUUGCG--CGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 165299 0.67 0.971333
Target:  5'- aUCUCGcc-GCGCGcCGCUcgUCGCUguGCGGc -3'
miRNA:   3'- -AGAGUucuUGCGC-GCGA--AGCGG--UGCC- -5'
8960 5' -54.1 NC_002512.2 + 57941 0.67 0.971333
Target:  5'- --gCGGGAgauagACGgGCGCggCGCgGCGGg -3'
miRNA:   3'- agaGUUCU-----UGCgCGCGaaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 91573 0.67 0.970211
Target:  5'- cUCUCGcggauccgcuacGAGCGCGCGCggcaccacgaGCUGCGGa -3'
miRNA:   3'- -AGAGUu-----------CUUGCGCGCGaag-------CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 107591 0.67 0.968468
Target:  5'- aUCUCGucGACGUGCGgcUCGCUgACGGg -3'
miRNA:   3'- -AGAGUucUUGCGCGCgaAGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 183458 0.67 0.968468
Target:  5'- -gUCGAGAACGUcgGCGC--CGCCACc- -3'
miRNA:   3'- agAGUUCUUGCG--CGCGaaGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 97393 0.67 0.968468
Target:  5'- --aCGGGGGCGgGCGCgaCGaCGCGGa -3'
miRNA:   3'- agaGUUCUUGCgCGCGaaGCgGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 111973 0.67 0.968468
Target:  5'- aUCUCGcacGugGCGCGCUg-GCCGUGGa -3'
miRNA:   3'- -AGAGUuc-UugCGCGCGAagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 129271 0.67 0.968468
Target:  5'- gCUCcAGAAgcuguCGUGCGUcgaGCCGCGGg -3'
miRNA:   3'- aGAGuUCUU-----GCGCGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 108719 0.67 0.968468
Target:  5'- gUC-CGAGAACGCcucGCcCUggGCCGCGGc -3'
miRNA:   3'- -AGaGUUCUUGCG---CGcGAagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 192879 0.67 0.96757
Target:  5'- --cCGGGGACGCauauaagcgccgucGCGCUcCGCgGCGGu -3'
miRNA:   3'- agaGUUCUUGCG--------------CGCGAaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 150417 0.68 0.965405
Target:  5'- --cCAcGGGCGCGCGg-UCGCCccgACGGg -3'
miRNA:   3'- agaGUuCUUGCGCGCgaAGCGG---UGCC- -5'
8960 5' -54.1 NC_002512.2 + 31755 0.68 0.965405
Target:  5'- ----cGGGGCuCGCGCUUCGCCAaccucaaGGg -3'
miRNA:   3'- agaguUCUUGcGCGCGAAGCGGUg------CC- -5'
8960 5' -54.1 NC_002512.2 + 52860 0.68 0.965405
Target:  5'- gCUCAacuggcGGGACGCGCagGCggcccugaCGCCACGa -3'
miRNA:   3'- aGAGU------UCUUGCGCG--CGaa------GCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.