miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 80806 0.73 0.774231
Target:  5'- ---gAGGAGCGCGCGCg-CGCCuCGGc -3'
miRNA:   3'- agagUUCUUGCGCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 216183 0.73 0.783303
Target:  5'- gUCUCGGGAuCGCGCccGUgaucacCGCCGCGGc -3'
miRNA:   3'- -AGAGUUCUuGCGCG--CGaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 180860 0.73 0.792246
Target:  5'- gCUCGAGGAUGCGUucguccGCgUUCGUCACGa -3'
miRNA:   3'- aGAGUUCUUGCGCG------CG-AAGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 115074 0.73 0.792246
Target:  5'- --aCGGGAACGuCGCGCggCGCCugGc -3'
miRNA:   3'- agaGUUCUUGC-GCGCGaaGCGGugCc -5'
8960 5' -54.1 NC_002512.2 + 73677 0.73 0.792246
Target:  5'- --aCGGGAGCGCGUGCggcaUCGCUuuCGGg -3'
miRNA:   3'- agaGUUCUUGCGCGCGa---AGCGGu-GCC- -5'
8960 5' -54.1 NC_002512.2 + 38383 0.73 0.792246
Target:  5'- cCUCGuAGGAagggaGCGCGCcggUCGCCGCGc -3'
miRNA:   3'- aGAGU-UCUUg----CGCGCGa--AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 179396 0.73 0.792246
Target:  5'- cCUCGGGGAUGCGCGCcauccugCGCC-CGu -3'
miRNA:   3'- aGAGUUCUUGCGCGCGaa-----GCGGuGCc -5'
8960 5' -54.1 NC_002512.2 + 138375 0.73 0.792246
Target:  5'- cUUCGAGAuccggACGCaacggagccuGCGCUUCgaGCCGCGGg -3'
miRNA:   3'- aGAGUUCU-----UGCG----------CGCGAAG--CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 60803 0.72 0.807989
Target:  5'- --aCGAGGACGCGgGCcgcgacgccgcCGCCGCGGa -3'
miRNA:   3'- agaGUUCUUGCGCgCGaa---------GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 143518 0.72 0.809709
Target:  5'- cUCUCcAGGGCGCGCcugGCggccucgUCGCCGuCGGc -3'
miRNA:   3'- -AGAGuUCUUGCGCG---CGa------AGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 116497 0.72 0.809709
Target:  5'- ---gGAGAGCGCGCGCaaCGCCcUGGu -3'
miRNA:   3'- agagUUCUUGCGCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 184956 0.72 0.818214
Target:  5'- gCUCGAGAGCauggaGCGCGUc-CGCCGCGcGg -3'
miRNA:   3'- aGAGUUCUUG-----CGCGCGaaGCGGUGC-C- -5'
8960 5' -54.1 NC_002512.2 + 134306 0.72 0.834732
Target:  5'- cUUCGAGGACGUcgccggggccgGCGCcgacggacUCGCCGCGGc -3'
miRNA:   3'- aGAGUUCUUGCG-----------CGCGa-------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 215367 0.72 0.842731
Target:  5'- aCUCcgu--CGCGCGCUUCGCCGuCGc -3'
miRNA:   3'- aGAGuucuuGCGCGCGAAGCGGU-GCc -5'
8960 5' -54.1 NC_002512.2 + 183133 0.72 0.842731
Target:  5'- gUUCAGGGcccgguuccccuGCGCGCGCUUcccCGCCGCc- -3'
miRNA:   3'- aGAGUUCU------------UGCGCGCGAA---GCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 15945 0.72 0.842731
Target:  5'- aUUCAAGGACaucaGCGCgGCgacucgcacUCGCCGCGGu -3'
miRNA:   3'- aGAGUUCUUG----CGCG-CGa--------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 218620 0.72 0.84588
Target:  5'- aCUCgAAGGACGCGCGUcgggacccugucgCGCCcgGCGGa -3'
miRNA:   3'- aGAG-UUCUUGCGCGCGaa-----------GCGG--UGCC- -5'
8960 5' -54.1 NC_002512.2 + 170370 0.71 0.850547
Target:  5'- --cCAGGGcCGUGCGCggCGCCGCGc -3'
miRNA:   3'- agaGUUCUuGCGCGCGaaGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 101645 0.71 0.850547
Target:  5'- gCUCGaggGGAGCGCG-GCg--GCCGCGGa -3'
miRNA:   3'- aGAGU---UCUUGCGCgCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 81999 0.71 0.858174
Target:  5'- gUCUCGGGGGCGguCGCgGCgagccgUCGCC-CGGg -3'
miRNA:   3'- -AGAGUUCUUGC--GCG-CGa-----AGCGGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.