Results 21 - 40 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8960 | 5' | -54.1 | NC_002512.2 | + | 220160 | 0.66 | 0.984722 |
Target: 5'- --cCAAGGGCGuCGUGCUcUGCguCGGg -3' miRNA: 3'- agaGUUCUUGC-GCGCGAaGCGguGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 98209 | 0.66 | 0.984722 |
Target: 5'- uUCUCGGGGACcuucccgaGCagucuccggGUGCUcUCGUCGCGGa -3' miRNA: 3'- -AGAGUUCUUG--------CG---------CGCGA-AGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 169053 | 0.66 | 0.984722 |
Target: 5'- aUCUCcucGGGCGCGagggGCUcCGCgGCGGc -3' miRNA: 3'- -AGAGuu-CUUGCGCg---CGAaGCGgUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 122525 | 0.66 | 0.984722 |
Target: 5'- gCUCcccGGCGCGcCGCUggacaucaggcUCGCCGCGa -3' miRNA: 3'- aGAGuucUUGCGC-GCGA-----------AGCGGUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 154288 | 0.66 | 0.986385 |
Target: 5'- --gCGcaGACGCGCGCgaaagcCGCCACGu -3' miRNA: 3'- agaGUucUUGCGCGCGaa----GCGGUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 191905 | 0.66 | 0.982909 |
Target: 5'- aUUCAcaugGGAGCGCGCuaUgaUCGUgACGGc -3' miRNA: 3'- aGAGU----UCUUGCGCGcgA--AGCGgUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 221389 | 0.66 | 0.982909 |
Target: 5'- cCUCGggcGGGGCGCGgGCggggagGCgGCGGg -3' miRNA: 3'- aGAGU---UCUUGCGCgCGaag---CGgUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 135245 | 0.66 | 0.987905 |
Target: 5'- cCUCGAGGccgucguccGCGcCGCGCUcgacgagGCCugGGc -3' miRNA: 3'- aGAGUUCU---------UGC-GCGCGAag-----CGGugCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 16198 | 0.66 | 0.986385 |
Target: 5'- gUUCGAGGAcCGCGgGCgaCGCCG-GGc -3' miRNA: 3'- aGAGUUCUU-GCGCgCGaaGCGGUgCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 112548 | 0.66 | 0.987905 |
Target: 5'- cUCgugCGAGAACGC-CGg--CGCCAgCGGg -3' miRNA: 3'- -AGa--GUUCUUGCGcGCgaaGCGGU-GCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 68366 | 0.66 | 0.987905 |
Target: 5'- aUUCAaacgcguggauGGGACGCGCGUcacugacCGUUACGGg -3' miRNA: 3'- aGAGU-----------UCUUGCGCGCGaa-----GCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 154367 | 0.66 | 0.984722 |
Target: 5'- --aCAAGAugGCG-GCUUCcGCgGCGa -3' miRNA: 3'- agaGUUCUugCGCgCGAAG-CGgUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 198768 | 0.66 | 0.984722 |
Target: 5'- gUCUCGGGGACcUGgGUguaCGCCACGu -3' miRNA: 3'- -AGAGUUCUUGcGCgCGaa-GCGGUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 214819 | 0.66 | 0.985404 |
Target: 5'- gUCUcCGAGAGuCGCggugacgaucaugauGCGCUUCGaCCugGa -3' miRNA: 3'- -AGA-GUUCUU-GCG---------------CGCGAAGC-GGugCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 186623 | 0.66 | 0.984722 |
Target: 5'- cCUCAGGAGaccaGCuCGCUgC-CCGCGGg -3' miRNA: 3'- aGAGUUCUUg---CGcGCGAaGcGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 92517 | 0.66 | 0.986385 |
Target: 5'- uUC-CGGGAGacCGCGCGgaUCuacccgGCCGCGGc -3' miRNA: 3'- -AGaGUUCUU--GCGCGCgaAG------CGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 157590 | 0.66 | 0.986385 |
Target: 5'- cUUUCAGGugauCGCcgGCGCgUUCGCCGCc- -3' miRNA: 3'- -AGAGUUCuu--GCG--CGCG-AAGCGGUGcc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 186200 | 0.66 | 0.986385 |
Target: 5'- cCUgGAGGGCucGgGCGCcgaugaCGCCGCGGc -3' miRNA: 3'- aGAgUUCUUG--CgCGCGaa----GCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 221495 | 0.66 | 0.982909 |
Target: 5'- gCUCG---GCGUccuauuuuccuGCGCggCGCCGCGGa -3' miRNA: 3'- aGAGUucuUGCG-----------CGCGaaGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 129318 | 0.66 | 0.982909 |
Target: 5'- -----cGAGCGCccgGCGCUucugCGUCACGGa -3' miRNA: 3'- agaguuCUUGCG---CGCGAa---GCGGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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