miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 33639 0.76 0.618378
Target:  5'- --gCGAGAgGCGCGCGCgggCGCgGCGGa -3'
miRNA:   3'- agaGUUCU-UGCGCGCGaa-GCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 33670 0.68 0.951073
Target:  5'- gUCUCAgAGGcucACGCGCcggagGC-UCGCCAgGGa -3'
miRNA:   3'- -AGAGU-UCU---UGCGCG-----CGaAGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 38383 0.73 0.792246
Target:  5'- cCUCGuAGGAagggaGCGCGCcggUCGCCGCGc -3'
miRNA:   3'- aGAGU-UCUUg----CGCGCGa--AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 40025 0.67 0.975023
Target:  5'- gUCUCc--GACGCGCgacgagguugcggacGUUUCGCCcGCGGg -3'
miRNA:   3'- -AGAGuucUUGCGCG---------------CGAAGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 41371 0.7 0.90582
Target:  5'- -gUUGAGGACGcCGCGCUcguaggacaccUCGUUGCGGg -3'
miRNA:   3'- agAGUUCUUGC-GCGCGA-----------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 43049 0.66 0.987905
Target:  5'- cCUCGGcGACGCGCaggGCcUCGCCGaGGc -3'
miRNA:   3'- aGAGUUcUUGCGCG---CGaAGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 45384 0.69 0.933232
Target:  5'- --aCGAGGACGCGgGCcgggacugUCGCUcguGCGGg -3'
miRNA:   3'- agaGUUCUUGCGCgCGa-------AGCGG---UGCC- -5'
8960 5' -54.1 NC_002512.2 + 52860 0.68 0.965405
Target:  5'- gCUCAacuggcGGGACGCGCagGCggcccugaCGCCACGa -3'
miRNA:   3'- aGAGU------UCUUGCGCG--CGaa------GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 57941 0.67 0.971333
Target:  5'- --gCGGGAgauagACGgGCGCggCGCgGCGGg -3'
miRNA:   3'- agaGUUCU-----UGCgCGCGaaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 58085 0.68 0.946949
Target:  5'- --gCAGGAGCGCGCGCcgUCGggACGa -3'
miRNA:   3'- agaGUUCUUGCGCGCGa-AGCggUGCc -5'
8960 5' -54.1 NC_002512.2 + 59995 0.67 0.974006
Target:  5'- -aUCAAGAagGCGaaCGCGCUgaagaaGCUGCGGa -3'
miRNA:   3'- agAGUUCU--UGC--GCGCGAag----CGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 60803 0.72 0.807989
Target:  5'- --aCGAGGACGCGgGCcgcgacgccgcCGCCGCGGa -3'
miRNA:   3'- agaGUUCUUGCGCgCGaa---------GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 60908 0.66 0.981142
Target:  5'- gCUCGGucGAGCGgacaccgaccgcgaaGCGCUUCGCguCGGa -3'
miRNA:   3'- aGAGUU--CUUGCg--------------CGCGAAGCGguGCC- -5'
8960 5' -54.1 NC_002512.2 + 66794 0.68 0.962139
Target:  5'- -gUCcGGAugGCGCGCUUgacgacgaccUGCCACc- -3'
miRNA:   3'- agAGuUCUugCGCGCGAA----------GCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 68366 0.66 0.987905
Target:  5'- aUUCAaacgcguggauGGGACGCGCGUcacugacCGUUACGGg -3'
miRNA:   3'- aGAGU-----------UCUUGCGCGCGaa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 68897 0.7 0.893278
Target:  5'- cCUCGccGGGGCGguCGUGCUgcuggcCGCCGCGGc -3'
miRNA:   3'- aGAGU--UCUUGC--GCGCGAa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 71377 0.67 0.971333
Target:  5'- ---aGGGAGCGCugGCGCag-GCCGCGGa -3'
miRNA:   3'- agagUUCUUGCG--CGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 72862 0.68 0.958664
Target:  5'- gCUCcGGGcCGCGuCGCcgUUGUCGCGGg -3'
miRNA:   3'- aGAGuUCUuGCGC-GCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 73677 0.73 0.792246
Target:  5'- --aCGGGAGCGCGUGCggcaUCGCUuuCGGg -3'
miRNA:   3'- agaGUUCUUGCGCGCGa---AGCGGu-GCC- -5'
8960 5' -54.1 NC_002512.2 + 75505 0.67 0.978802
Target:  5'- --aCGGGGGCGgGacUUUCGCCGCGGa -3'
miRNA:   3'- agaGUUCUUGCgCgcGAAGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.