miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 206864 0.71 0.872837
Target:  5'- cUUCGGGGGCG-GCGCcgagcUCGCCgACGGg -3'
miRNA:   3'- aGAGUUCUUGCgCGCGa----AGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 203390 0.68 0.962139
Target:  5'- -aUCAGGAACG-GCaGCgUCGCCACc- -3'
miRNA:   3'- agAGUUCUUGCgCG-CGaAGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 202184 0.77 0.568675
Target:  5'- aCggGAGAACGCGCGUUccggaUCGCCgACGGa -3'
miRNA:   3'- aGagUUCUUGCGCGCGA-----AGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 200704 0.67 0.974006
Target:  5'- gUCUCGGGuGGCGuCGgGCUgcCGCCcgGCGGu -3'
miRNA:   3'- -AGAGUUC-UUGC-GCgCGAa-GCGG--UGCC- -5'
8960 5' -54.1 NC_002512.2 + 200145 0.68 0.962139
Target:  5'- --cCGGGcccccuCGCGCGC--CGCCACGGu -3'
miRNA:   3'- agaGUUCuu----GCGCGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 198768 0.66 0.984722
Target:  5'- gUCUCGGGGACcUGgGUguaCGCCACGu -3'
miRNA:   3'- -AGAGUUCUUGcGCgCGaa-GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 198027 0.7 0.908222
Target:  5'- ---gAGGGACGCGCGCgcgaggggacgcggUCGUCACaGGg -3'
miRNA:   3'- agagUUCUUGCGCGCGa-------------AGCGGUG-CC- -5'
8960 5' -54.1 NC_002512.2 + 197125 0.68 0.962139
Target:  5'- cUUCGAGAucaucgGCGCccuGgGCUacaaggUCGCCACGGc -3'
miRNA:   3'- aGAGUUCU------UGCG---CgCGA------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 195417 0.68 0.964123
Target:  5'- uUCUCGGGGACGUGCaGCgacugguucggggUCGUCAgcUGGu -3'
miRNA:   3'- -AGAGUUCUUGCGCG-CGa------------AGCGGU--GCC- -5'
8960 5' -54.1 NC_002512.2 + 193884 0.66 0.987905
Target:  5'- -gUgGAcGACGCGggaGCgggUCGCCGCGGu -3'
miRNA:   3'- agAgUUcUUGCGCg--CGa--AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 192879 0.67 0.96757
Target:  5'- --cCGGGGACGCauauaagcgccgucGCGCUcCGCgGCGGu -3'
miRNA:   3'- agaGUUCUUGCG--------------CGCGAaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 191905 0.66 0.982909
Target:  5'- aUUCAcaugGGAGCGCGCuaUgaUCGUgACGGc -3'
miRNA:   3'- aGAGU----UCUUGCGCGcgA--AGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 190948 0.67 0.976494
Target:  5'- --cCGGGcgcACGCGgGCgccCGCCGCGGc -3'
miRNA:   3'- agaGUUCu--UGCGCgCGaa-GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 189597 0.68 0.955356
Target:  5'- cCUCGGGAcgacguuCGUGCGCggcggccgcacgcgaUCGUCGCGGu -3'
miRNA:   3'- aGAGUUCUu------GCGCGCGa--------------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 186623 0.66 0.984722
Target:  5'- cCUCAGGAGaccaGCuCGCUgC-CCGCGGg -3'
miRNA:   3'- aGAGUUCUUg---CGcGCGAaGcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 186200 0.66 0.986385
Target:  5'- cCUgGAGGGCucGgGCGCcgaugaCGCCGCGGc -3'
miRNA:   3'- aGAgUUCUUG--CgCGCGaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 185188 0.74 0.717551
Target:  5'- uUCUcCGAGAACGCG-GCggcggucgaCGCCGCGGu -3'
miRNA:   3'- -AGA-GUUCUUGCGCgCGaa-------GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 184956 0.72 0.818214
Target:  5'- gCUCGAGAGCauggaGCGCGUc-CGCCGCGcGg -3'
miRNA:   3'- aGAGUUCUUG-----CGCGCGaaGCGGUGC-C- -5'
8960 5' -54.1 NC_002512.2 + 184857 0.77 0.588473
Target:  5'- cCUCGGGuccaccgucAGCGUGCGCUgcuacUGCCACGGg -3'
miRNA:   3'- aGAGUUC---------UUGCGCGCGAa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 183953 0.78 0.539314
Target:  5'- gCUCccGGGACGCGCGCUcgggcgucgUCGCCuguCGGg -3'
miRNA:   3'- aGAGu-UCUUGCGCGCGA---------AGCGGu--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.