miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 227423 0.7 0.893278
Target:  5'- cUCUCGcGcGCGgGCGCgg-GCCGCGGu -3'
miRNA:   3'- -AGAGUuCuUGCgCGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 226680 0.69 0.93803
Target:  5'- cUCUCu-GAGCGcCGgGCcgUCGCcCGCGGc -3'
miRNA:   3'- -AGAGuuCUUGC-GCgCGa-AGCG-GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 226484 0.71 0.879863
Target:  5'- --cCGGGGccCGgGCGCUccccUCGCCGCGGg -3'
miRNA:   3'- agaGUUCUu-GCgCGCGA----AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 225709 0.71 0.872837
Target:  5'- cCUCAGGAuguguCGCcCGCga-GCCGCGGc -3'
miRNA:   3'- aGAGUUCUu----GCGcGCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 222631 0.68 0.951073
Target:  5'- aUCcCGAcGGACGC-CGCUcCGCCGCGa -3'
miRNA:   3'- -AGaGUU-CUUGCGcGCGAaGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 222397 0.71 0.865606
Target:  5'- cCUCAuGGAGCGcCGCgGCUUCGgCGgGGg -3'
miRNA:   3'- aGAGU-UCUUGC-GCG-CGAAGCgGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 221495 0.66 0.982909
Target:  5'- gCUCG---GCGUccuauuuuccuGCGCggCGCCGCGGa -3'
miRNA:   3'- aGAGUucuUGCG-----------CGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 221389 0.66 0.982909
Target:  5'- cCUCGggcGGGGCGCGgGCggggagGCgGCGGg -3'
miRNA:   3'- aGAGU---UCUUGCGCgCGaag---CGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 220160 0.66 0.984722
Target:  5'- --cCAAGGGCGuCGUGCUcUGCguCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGAaGCGguGCC- -5'
8960 5' -54.1 NC_002512.2 + 218620 0.72 0.84588
Target:  5'- aCUCgAAGGACGCGCGUcgggacccugucgCGCCcgGCGGa -3'
miRNA:   3'- aGAG-UUCUUGCGCGCGaa-----------GCGG--UGCC- -5'
8960 5' -54.1 NC_002512.2 + 217600 0.69 0.937561
Target:  5'- cCUCGGGGgucgucgGCGacuCGgGCggCGCCACGGg -3'
miRNA:   3'- aGAGUUCU-------UGC---GCgCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 216183 0.73 0.783303
Target:  5'- gUCUCGGGAuCGCGCccGUgaucacCGCCGCGGc -3'
miRNA:   3'- -AGAGUUCUuGCGCG--CGaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 215367 0.72 0.842731
Target:  5'- aCUCcgu--CGCGCGCUUCGCCGuCGc -3'
miRNA:   3'- aGAGuucuuGCGCGCGAAGCGGU-GCc -5'
8960 5' -54.1 NC_002512.2 + 214819 0.66 0.985404
Target:  5'- gUCUcCGAGAGuCGCggugacgaucaugauGCGCUUCGaCCugGa -3'
miRNA:   3'- -AGA-GUUCUU-GCG---------------CGCGAAGC-GGugCc -5'
8960 5' -54.1 NC_002512.2 + 213997 0.71 0.872837
Target:  5'- uUCUCGaaGGGugGCGCGa--CGCC-CGGa -3'
miRNA:   3'- -AGAGU--UCUugCGCGCgaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 212092 0.68 0.954597
Target:  5'- --aCGAcGAGCGCGUGC-UCGCCgaguuccACGGc -3'
miRNA:   3'- agaGUU-CUUGCGCGCGaAGCGG-------UGCC- -5'
8960 5' -54.1 NC_002512.2 + 211347 0.74 0.727223
Target:  5'- gCUgGGGGACGCGCGCggccugacCGCC-CGGc -3'
miRNA:   3'- aGAgUUCUUGCGCGCGaa------GCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 210770 1.11 0.005953
Target:  5'- aUCUCAAGAACGCGCGCUUCGCCACGGc -3'
miRNA:   3'- -AGAGUUCUUGCGCGCGAAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 209953 0.67 0.978802
Target:  5'- gCUCGAccGGGCGCGgGUccucaaggUCGCCAaCGGc -3'
miRNA:   3'- aGAGUU--CUUGCGCgCGa-------AGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 209279 0.69 0.942603
Target:  5'- cUUCGAGGACGUggaGCGCUgCGUCAaGGa -3'
miRNA:   3'- aGAGUUCUUGCG---CGCGAaGCGGUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.