miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 27704 0.7 0.89966
Target:  5'- -aUCcGGAACGCGCGUUcuccCGUCACGa -3'
miRNA:   3'- agAGuUCUUGCGCGCGAa---GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 134306 0.72 0.834732
Target:  5'- cUUCGAGGACGUcgccggggccgGCGCcgacggacUCGCCGCGGc -3'
miRNA:   3'- aGAGUUCUUGCG-----------CGCGa-------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 15945 0.72 0.842731
Target:  5'- aUUCAAGGACaucaGCGCgGCgacucgcacUCGCCGCGGu -3'
miRNA:   3'- aGAGUUCUUG----CGCG-CGa--------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 101645 0.71 0.850547
Target:  5'- gCUCGaggGGAGCGCG-GCg--GCCGCGGa -3'
miRNA:   3'- aGAGU---UCUUGCGCgCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 81999 0.71 0.858174
Target:  5'- gUCUCGGGGGCGguCGCgGCgagccgUCGCC-CGGg -3'
miRNA:   3'- -AGAGUUCUUGC--GCG-CGa-----AGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 103095 0.71 0.879863
Target:  5'- aUCcCGGGGACGgGCGCggcacgcgUCGCCGCc- -3'
miRNA:   3'- -AGaGUUCUUGCgCGCGa-------AGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 111846 0.7 0.893278
Target:  5'- -gUCGuAGAGCGC-CGCcgUCGCCGCGu -3'
miRNA:   3'- agAGU-UCUUGCGcGCGa-AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 68897 0.7 0.893278
Target:  5'- cCUCGccGGGGCGguCGUGCUgcuggcCGCCGCGGc -3'
miRNA:   3'- aGAGU--UCUUGC--GCGCGAa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 82605 0.7 0.89966
Target:  5'- --cCGGGAACGaCGCGCggCGUCcCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 116497 0.72 0.809709
Target:  5'- ---gGAGAGCGCGCGCaaCGCCcUGGu -3'
miRNA:   3'- agagUUCUUGCGCGCGaaGCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 60803 0.72 0.807989
Target:  5'- --aCGAGGACGCGgGCcgcgacgccgcCGCCGCGGa -3'
miRNA:   3'- agaGUUCUUGCGCgCGaa---------GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 38383 0.73 0.792246
Target:  5'- cCUCGuAGGAagggaGCGCGCcggUCGCCGCGc -3'
miRNA:   3'- aGAGU-UCUUg----CGCGCGa--AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 79054 0.81 0.378194
Target:  5'- aUCUCGGGGaaGCGCgGCGCggUCGUCACGGc -3'
miRNA:   3'- -AGAGUUCU--UGCG-CGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 30416 0.77 0.558838
Target:  5'- --aCGGGGACGCGgGCgUCGUCGCGGc -3'
miRNA:   3'- agaGUUCUUGCGCgCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 99782 0.77 0.568675
Target:  5'- cCUCAAGGGCGCGCcCUUCacucgGCCGuCGGg -3'
miRNA:   3'- aGAGUUCUUGCGCGcGAAG-----CGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 129429 0.76 0.598419
Target:  5'- --cCGAGAACGCGCuCUUCGCCGucgccCGGa -3'
miRNA:   3'- agaGUUCUUGCGCGcGAAGCGGU-----GCC- -5'
8960 5' -54.1 NC_002512.2 + 33639 0.76 0.618378
Target:  5'- --gCGAGAgGCGCGCGCgggCGCgGCGGa -3'
miRNA:   3'- agaGUUCU-UGCGCGCGaa-GCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 5480 0.74 0.736815
Target:  5'- aCUCGGGGACcucgugGCGCGCguccgCGCCGgGGu -3'
miRNA:   3'- aGAGUUCUUG------CGCGCGaa---GCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 154138 0.73 0.765038
Target:  5'- gUCUCc--GACGCGCGCUcggUCGCCucccguucgGCGGa -3'
miRNA:   3'- -AGAGuucUUGCGCGCGA---AGCGG---------UGCC- -5'
8960 5' -54.1 NC_002512.2 + 80806 0.73 0.774231
Target:  5'- ---gAGGAGCGCGCGCg-CGCCuCGGc -3'
miRNA:   3'- agagUUCUUGCGCGCGaaGCGGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.