miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 193884 0.66 0.987905
Target:  5'- -gUgGAcGACGCGggaGCgggUCGCCGCGGu -3'
miRNA:   3'- agAgUUcUUGCGCg--CGa--AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 114762 0.66 0.982909
Target:  5'- aUC-CAGG--UGCGCGggUCGCgACGGg -3'
miRNA:   3'- -AGaGUUCuuGCGCGCgaAGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 221495 0.66 0.982909
Target:  5'- gCUCG---GCGUccuauuuuccuGCGCggCGCCGCGGa -3'
miRNA:   3'- aGAGUucuUGCG-----------CGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 210770 1.11 0.005953
Target:  5'- aUCUCAAGAACGCGCGCUUCGCCACGGc -3'
miRNA:   3'- -AGAGUUCUUGCGCGCGAAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 157590 0.66 0.986385
Target:  5'- cUUUCAGGugauCGCcgGCGCgUUCGCCGCc- -3'
miRNA:   3'- -AGAGUUCuu--GCG--CGCG-AAGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 154288 0.66 0.986385
Target:  5'- --gCGcaGACGCGCGCgaaagcCGCCACGu -3'
miRNA:   3'- agaGUucUUGCGCGCGaa----GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 186200 0.66 0.986385
Target:  5'- cCUgGAGGGCucGgGCGCcgaugaCGCCGCGGc -3'
miRNA:   3'- aGAgUUCUUG--CgCGCGaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 214819 0.66 0.985404
Target:  5'- gUCUcCGAGAGuCGCggugacgaucaugauGCGCUUCGaCCugGa -3'
miRNA:   3'- -AGA-GUUCUU-GCG---------------CGCGAAGC-GGugCc -5'
8960 5' -54.1 NC_002512.2 + 122525 0.66 0.984722
Target:  5'- gCUCcccGGCGCGcCGCUggacaucaggcUCGCCGCGa -3'
miRNA:   3'- aGAGuucUUGCGC-GCGA-----------AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 191905 0.66 0.982909
Target:  5'- aUUCAcaugGGAGCGCGCuaUgaUCGUgACGGc -3'
miRNA:   3'- aGAGU----UCUUGCGCGcgA--AGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 198768 0.66 0.984722
Target:  5'- gUCUCGGGGACcUGgGUguaCGCCACGu -3'
miRNA:   3'- -AGAGUUCUUGcGCgCGaa-GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 169053 0.66 0.984722
Target:  5'- aUCUCcucGGGCGCGagggGCUcCGCgGCGGc -3'
miRNA:   3'- -AGAGuu-CUUGCGCg---CGAaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 77077 0.66 0.987905
Target:  5'- gCUCGc---CGCcCGCcgUCGCCGCGGa -3'
miRNA:   3'- aGAGUucuuGCGcGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 186623 0.66 0.984722
Target:  5'- cCUCAGGAGaccaGCuCGCUgC-CCGCGGg -3'
miRNA:   3'- aGAGUUCUUg---CGcGCGAaGcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 68366 0.66 0.987905
Target:  5'- aUUCAaacgcguggauGGGACGCGCGUcacugacCGUUACGGg -3'
miRNA:   3'- aGAGU-----------UCUUGCGCGCGaa-----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 220160 0.66 0.984722
Target:  5'- --cCAAGGGCGuCGUGCUcUGCguCGGg -3'
miRNA:   3'- agaGUUCUUGC-GCGCGAaGCGguGCC- -5'
8960 5' -54.1 NC_002512.2 + 154367 0.66 0.984722
Target:  5'- --aCAAGAugGCG-GCUUCcGCgGCGa -3'
miRNA:   3'- agaGUUCUugCGCgCGAAG-CGgUGCc -5'
8960 5' -54.1 NC_002512.2 + 221389 0.66 0.982909
Target:  5'- cCUCGggcGGGGCGCGgGCggggagGCgGCGGg -3'
miRNA:   3'- aGAGU---UCUUGCGCgCGaag---CGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 77554 0.66 0.986385
Target:  5'- -gUCGcGGACG-GCGggUCGCCcACGGg -3'
miRNA:   3'- agAGUuCUUGCgCGCgaAGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 92517 0.66 0.986385
Target:  5'- uUC-CGGGAGacCGCGCGgaUCuacccgGCCGCGGc -3'
miRNA:   3'- -AGaGUUCUU--GCGCGCgaAG------CGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.