miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 183458 0.67 0.968468
Target:  5'- -gUCGAGAACGUcgGCGC--CGCCACc- -3'
miRNA:   3'- agAGUUCUUGCG--CGCGaaGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 183133 0.72 0.842731
Target:  5'- gUUCAGGGcccgguuccccuGCGCGCGCUUcccCGCCGCc- -3'
miRNA:   3'- aGAGUUCU------------UGCGCGCGAA---GCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 180860 0.73 0.792246
Target:  5'- gCUCGAGGAUGCGUucguccGCgUUCGUCACGa -3'
miRNA:   3'- aGAGUUCUUGCGCG------CG-AAGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 180643 0.7 0.886678
Target:  5'- uUCUCuAGggUGCG-GCaggcCGCCGCGGu -3'
miRNA:   3'- -AGAGuUCuuGCGCgCGaa--GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 179396 0.73 0.792246
Target:  5'- cCUCGGGGAUGCGCGCcauccugCGCC-CGu -3'
miRNA:   3'- aGAGUUCUUGCGCGCGaa-----GCGGuGCc -5'
8960 5' -54.1 NC_002512.2 + 178238 0.67 0.979677
Target:  5'- gUCUcCGGGGACG-GCGCggucuccggguccgUCGCCAUGu -3'
miRNA:   3'- -AGA-GUUCUUGCgCGCGa-------------AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 175196 0.68 0.962139
Target:  5'- uUCUCc----CGCGCGUUcaUCGCCGCGu -3'
miRNA:   3'- -AGAGuucuuGCGCGCGA--AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 173609 0.68 0.946949
Target:  5'- -gUCGAGuAGCGggaGCGCcucCGCCGCGGc -3'
miRNA:   3'- agAGUUC-UUGCg--CGCGaa-GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 171664 0.68 0.946949
Target:  5'- --gCGGGAcaucuACGCGCGCggggugcgCGCCGCGc -3'
miRNA:   3'- agaGUUCU-----UGCGCGCGaa------GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 171521 0.68 0.946949
Target:  5'- cCUCGAGGACGUcgaGCGCaucaagcccugUUCG-CACGGc -3'
miRNA:   3'- aGAGUUCUUGCG---CGCG-----------AAGCgGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 170370 0.71 0.850547
Target:  5'- --cCAGGGcCGUGCGCggCGCCGCGc -3'
miRNA:   3'- agaGUUCUuGCGCGCGaaGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 169053 0.66 0.984722
Target:  5'- aUCUCcucGGGCGCGagggGCUcCGCgGCGGc -3'
miRNA:   3'- -AGAGuu-CUUGCGCg---CGAaGCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 168956 0.67 0.974006
Target:  5'- cUCUCc--GACGCgaaGCGCUUCGCgGuCGGu -3'
miRNA:   3'- -AGAGuucUUGCG---CGCGAAGCGgU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 165299 0.67 0.971333
Target:  5'- aUCUCGcc-GCGCGcCGCUcgUCGCUguGCGGc -3'
miRNA:   3'- -AGAGUucuUGCGC-GCGA--AGCGG--UGCC- -5'
8960 5' -54.1 NC_002512.2 + 165254 0.7 0.90582
Target:  5'- cCUCGcGGACGCGuCGCggaGCCcCGGa -3'
miRNA:   3'- aGAGUuCUUGCGC-GCGaagCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 164907 0.67 0.974006
Target:  5'- -aUCAAG-ACGCaGUGCgagcucUCGCCGCGu -3'
miRNA:   3'- agAGUUCuUGCG-CGCGa-----AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 164739 0.73 0.774231
Target:  5'- -gUCGAGGACcgguaGCGCGC--CGCCAUGGa -3'
miRNA:   3'- agAGUUCUUG-----CGCGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 157791 0.71 0.879863
Target:  5'- -aUCAAGAACcgggcgGUGUGCaggUCGCUGCGGg -3'
miRNA:   3'- agAGUUCUUG------CGCGCGa--AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 157590 0.66 0.986385
Target:  5'- cUUUCAGGugauCGCcgGCGCgUUCGCCGCc- -3'
miRNA:   3'- -AGAGUUCuu--GCG--CGCG-AAGCGGUGcc -5'
8960 5' -54.1 NC_002512.2 + 156565 0.67 0.976494
Target:  5'- ---gGAGAGCcugcugcgcucgGUGCGCUUCGUCAgCGGc -3'
miRNA:   3'- agagUUCUUG------------CGCGCGAAGCGGU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.