miRNA display CGI


Results 81 - 100 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 29030 0.66 0.916173
Target:  5'- gUCGA-CGCcauGCGGCAGagacGCGCCGCGc -3'
miRNA:   3'- -GGUUcGCGu--UGCCGUUc---CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 29768 0.66 0.896886
Target:  5'- aUCGA-CGCGACGGCGAugcugaaguaccccGGCGaccCCGCGa -3'
miRNA:   3'- -GGUUcGCGUUGCCGUU--------------CCGC---GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 29911 0.67 0.858317
Target:  5'- gCCGGGCGCGcggacGCGGCGGGaGUGCauaacaucaUGCuGGa -3'
miRNA:   3'- -GGUUCGCGU-----UGCCGUUC-CGCG---------GCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 30655 0.66 0.910573
Target:  5'- aUCGGGCuGCGcCGGaucuaccGGGCGgCGCGGu -3'
miRNA:   3'- -GGUUCG-CGUuGCCgu-----UCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 31665 0.66 0.904166
Target:  5'- gCGGGCGCGgccgugguggcggACGGgGAGGaggaCGCGGa -3'
miRNA:   3'- gGUUCGCGU-------------UGCCgUUCCgcg-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 32541 0.69 0.791791
Target:  5'- gCGGGCaGUgggggaucuucuccAGCcGCcGGGCGCCGCGGg -3'
miRNA:   3'- gGUUCG-CG--------------UUGcCGuUCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 32843 0.78 0.301644
Target:  5'- cCCAGGCuGCAggaggugACGGUgccguGGGUGCCGCGGu -3'
miRNA:   3'- -GGUUCG-CGU-------UGCCGu----UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 33633 0.73 0.54866
Target:  5'- gCCGAG-GCGAgaGGCGcgcgcGGGCGCgGCGGa -3'
miRNA:   3'- -GGUUCgCGUUg-CCGU-----UCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 34925 0.71 0.674287
Target:  5'- aCGAGa-CGACGGCGGGGuCGCgGCGa -3'
miRNA:   3'- gGUUCgcGUUGCCGUUCC-GCGgCGCc -5'
8961 5' -58.3 NC_002512.2 + 36620 0.67 0.865542
Target:  5'- aCAGGuCGCcgaGGCAGGGCG-CGCaGGc -3'
miRNA:   3'- gGUUC-GCGuugCCGUUCCGCgGCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 36673 0.74 0.501946
Target:  5'- cCCAGGCugccggGCAACGGCGAGcCGaagaCGCGGu -3'
miRNA:   3'- -GGUUCG------CGUUGCCGUUCcGCg---GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 36867 0.75 0.422746
Target:  5'- aUAGGCGUacuugcagGugGGCAGGGCGgcgcCCGCGGu -3'
miRNA:   3'- gGUUCGCG--------UugCCGUUCCGC----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 36998 0.68 0.827627
Target:  5'- gCgGAGCGCGACGGCGcuuauauGCGuCCcCGGg -3'
miRNA:   3'- -GgUUCGCGUUGCCGUuc-----CGC-GGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 37717 0.77 0.344164
Target:  5'- gCAGGacggacaGCGAgGGCAGGG-GCCGCGGg -3'
miRNA:   3'- gGUUCg------CGUUgCCGUUCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 38835 0.76 0.414412
Target:  5'- gCCAGGCGCGAcCGGUccacGuGCGCCGCGc -3'
miRNA:   3'- -GGUUCGCGUU-GCCGuu--C-CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 38914 0.71 0.674287
Target:  5'- -----gGCGACGGCccggaGGGGcCGCCGCGGc -3'
miRNA:   3'- gguucgCGUUGCCG-----UUCC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 39555 0.66 0.898735
Target:  5'- ---cGCGgGACGGUgccaAGGGCGgCGaCGGg -3'
miRNA:   3'- gguuCGCgUUGCCG----UUCCGCgGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 39618 0.67 0.886061
Target:  5'- aCgGGGCGCuuuGCGGCGAGauGUacguuuccuagGCCGCGa -3'
miRNA:   3'- -GgUUCGCGu--UGCCGUUC--CG-----------CGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 42082 0.67 0.865542
Target:  5'- aCCAGG-GCcgggGugGGCAggaAGGUGaCCGUGGu -3'
miRNA:   3'- -GGUUCgCG----UugCCGU---UCCGC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 42575 0.73 0.567737
Target:  5'- gCGGGCGCcgcgaggcgAGCGGCGGGGCGgacccgaagcCCGgGGg -3'
miRNA:   3'- gGUUCGCG---------UUGCCGUUCCGC----------GGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.