miRNA display CGI


Results 61 - 80 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 17895 0.69 0.785714
Target:  5'- aUAGGCgGCGGCGGCcccGAGGacgacgGCCGCGu -3'
miRNA:   3'- gGUUCG-CGUUGCCG---UUCCg-----CGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 18083 0.69 0.785714
Target:  5'- aUAGGUGCGccGCGGCGGgacGGCccCCGCGGc -3'
miRNA:   3'- gGUUCGCGU--UGCCGUU---CCGc-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 18136 0.66 0.904759
Target:  5'- cCCGcAGCGCccgGGCc--GCGUCGCGGg -3'
miRNA:   3'- -GGU-UCGCGuugCCGuucCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 18710 0.67 0.858317
Target:  5'- cCCGAGCagGGCGGCGAcGCGCU-CGGg -3'
miRNA:   3'- -GGUUCGcgUUGCCGUUcCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 19771 0.71 0.65492
Target:  5'- gCGGGCGCAG-GGCAGGGCGUacucgacguCGCa- -3'
miRNA:   3'- gGUUCGCGUUgCCGUUCCGCG---------GCGcc -5'
8961 5' -58.3 NC_002512.2 + 19862 0.69 0.756288
Target:  5'- -aAGGCGCGACGGUacggcuggacguugGuccgcAGGCGgUCGCGGa -3'
miRNA:   3'- ggUUCGCGUUGCCG--------------U-----UCCGC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 20134 0.71 0.668487
Target:  5'- gCgGAGCGCGACGGCuguccguaccggAAGGUGgacaggcagaccuucUCGCGGa -3'
miRNA:   3'- -GgUUCGCGUUGCCG------------UUCCGC---------------GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 20221 0.66 0.921558
Target:  5'- -aGGGC-CAGCGGCAucaucgacagGGGCacGCCGCa- -3'
miRNA:   3'- ggUUCGcGUUGCCGU----------UCCG--CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 21056 0.69 0.749898
Target:  5'- --cGGCGCGGCGcGUgAGGGCGCacggGCGGc -3'
miRNA:   3'- gguUCGCGUUGC-CG-UUCCGCGg---CGCC- -5'
8961 5' -58.3 NC_002512.2 + 21206 0.68 0.827627
Target:  5'- uCCAGG-GaCAGCGGCccccGGGaCGCCGCccGGg -3'
miRNA:   3'- -GGUUCgC-GUUGCCGu---UCC-GCGGCG--CC- -5'
8961 5' -58.3 NC_002512.2 + 22204 0.66 0.910573
Target:  5'- aCgGAGCGCuuCGGCcggcGGGagaGCC-CGGg -3'
miRNA:   3'- -GgUUCGCGuuGCCGu---UCCg--CGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 23286 0.69 0.769814
Target:  5'- uUCGAGUGCAcgcaggacaacgcguACGGCAccugcaaguucuGGCGCCcCGGg -3'
miRNA:   3'- -GGUUCGCGU---------------UGCCGUu-----------CCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 23353 0.66 0.892501
Target:  5'- aCGAGUGCGGCGaGCAcgAGGUGaCCaucacgGUGGa -3'
miRNA:   3'- gGUUCGCGUUGC-CGU--UCCGC-GG------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 23907 0.72 0.633542
Target:  5'- aUCAAGUGCAACGacgcgacgaaccuGUacgcgggcgaccuGAGGCGCCGCGc -3'
miRNA:   3'- -GGUUCGCGUUGC-------------CG-------------UUCCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 24293 0.74 0.501946
Target:  5'- cCCGcGgGaCAGCGGCGGGGCGaaCUGCGGu -3'
miRNA:   3'- -GGUuCgC-GUUGCCGUUCCGC--GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 24450 0.67 0.865542
Target:  5'- uCCGAaCGCA-CGGUggGGCGCCu--- -3'
miRNA:   3'- -GGUUcGCGUuGCCGuuCCGCGGcgcc -5'
8961 5' -58.3 NC_002512.2 + 27587 0.86 0.103782
Target:  5'- cCCAaaAGCGCGGCGGCAcGGCGCCcCGGu -3'
miRNA:   3'- -GGU--UCGCGUUGCCGUuCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 28073 0.77 0.336907
Target:  5'- cCCGGGCGCGGCGGagacggcggaGAGGuCGCCGCc- -3'
miRNA:   3'- -GGUUCGCGUUGCCg---------UUCC-GCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 28258 0.67 0.858317
Target:  5'- gCGAGUaCGACGGCGccuaccgcucGGCGCUgGCGGa -3'
miRNA:   3'- gGUUCGcGUUGCCGUu---------CCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 28704 0.66 0.916173
Target:  5'- aCgAAGCGguGCaGCGAGGgGUCcCGGc -3'
miRNA:   3'- -GgUUCGCguUGcCGUUCCgCGGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.