miRNA display CGI


Results 61 - 80 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 36867 0.75 0.422746
Target:  5'- aUAGGCGUacuugcagGugGGCAGGGCGgcgcCCGCGGu -3'
miRNA:   3'- gGUUCGCG--------UugCCGUUCCGC----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7303 0.75 0.430332
Target:  5'- aCAGGCcuccuccGCGACGGCGGGcCGCgGCGGg -3'
miRNA:   3'- gGUUCG-------CGUUGCCGUUCcGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 36673 0.74 0.501946
Target:  5'- cCCAGGCugccggGCAACGGCGAGcCGaagaCGCGGu -3'
miRNA:   3'- -GGUUCG------CGUUGCCGUUCcGCg---GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 152454 0.74 0.501946
Target:  5'- aCGGGCGC-GCGGCGuugggAGGCGUCcCGGg -3'
miRNA:   3'- gGUUCGCGuUGCCGU-----UCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 5874 0.74 0.505622
Target:  5'- cCCGGGCGUcguccGacucgucgcucguggACGGCGGGGCGC-GCGGg -3'
miRNA:   3'- -GGUUCGCG-----U---------------UGCCGUUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 51185 0.74 0.511158
Target:  5'- gCCAGcaaCGCGGCGGCc--GCGCUGCGGg -3'
miRNA:   3'- -GGUUc--GCGUUGCCGuucCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 2029 0.74 0.52044
Target:  5'- aCCAGGaggaGCGACaGCAGGGUgaucgGCUGCGGc -3'
miRNA:   3'- -GGUUCg---CGUUGcCGUUCCG-----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4893 0.73 0.529787
Target:  5'- -gGAGCgGCGACGGgAagaGGGCGCCGCc- -3'
miRNA:   3'- ggUUCG-CGUUGCCgU---UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 54039 0.73 0.529787
Target:  5'- uCCAggaagauaacGGCGaGGCGGCAggAGGCGCCaCGGa -3'
miRNA:   3'- -GGU----------UCGCgUUGCCGU--UCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 58997 0.73 0.539196
Target:  5'- uCCAGGCgGCcguCGGCGAGGaGCCGCu- -3'
miRNA:   3'- -GGUUCG-CGuu-GCCGUUCCgCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 54249 0.74 0.501946
Target:  5'- aCGucCGCAGCGGCAGGGCgGCgGCGu -3'
miRNA:   3'- gGUucGCGUUGCCGUUCCG-CGgCGCc -5'
8961 5' -58.3 NC_002512.2 + 24293 0.74 0.501946
Target:  5'- cCCGcGgGaCAGCGGCGGGGCGaaCUGCGGu -3'
miRNA:   3'- -GGUuCgC-GUUGCCGUUCCGC--GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 43866 0.75 0.448337
Target:  5'- gCCGAGCGCGACgcaGGCGuccAGGUGCCGg-- -3'
miRNA:   3'- -GGUUCGCGUUG---CCGU---UCCGCGGCgcc -5'
8961 5' -58.3 NC_002512.2 + 2826 0.75 0.457057
Target:  5'- gCGGGCGCGggcccggacgACGGC-GGGCaGCUGCGGc -3'
miRNA:   3'- gGUUCGCGU----------UGCCGuUCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 116591 0.75 0.457057
Target:  5'- aCCuGGgGCGAgGGCGggAGGCccGCCGCGGc -3'
miRNA:   3'- -GGuUCgCGUUgCCGU--UCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 17858 0.75 0.465867
Target:  5'- cCCGGGCGCGGugcuCGcGCAGGGC-CCGgGGg -3'
miRNA:   3'- -GGUUCGCGUU----GC-CGUUCCGcGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 85182 0.75 0.465867
Target:  5'- cCCAGGCGCGACGGguccccguGGGuCGCCG-GGu -3'
miRNA:   3'- -GGUUCGCGUUGCCgu------UCC-GCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 86863 0.74 0.474764
Target:  5'- gCGGGCGCAGCuG-AGGGCGCUGgGGa -3'
miRNA:   3'- gGUUCGCGUUGcCgUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 97457 0.74 0.483745
Target:  5'- -gGAGCGCAAcCGGUucuGGauCGCCGCGGu -3'
miRNA:   3'- ggUUCGCGUU-GCCGuu-CC--GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 155379 0.74 0.492806
Target:  5'- gUCGGG-GCGGCGGCGccggcGGGCGaUCGCGGa -3'
miRNA:   3'- -GGUUCgCGUUGCCGU-----UCCGC-GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.