miRNA display CGI


Results 61 - 80 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 155252 0.66 0.89812
Target:  5'- cCCGucgcGGCGuCGACGGCucgcgggagccGAGGCggcucgaGCCGaCGGa -3'
miRNA:   3'- -GGU----UCGC-GUUGCCG-----------UUCCG-------CGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 75557 0.66 0.892501
Target:  5'- gCGGGCucGCcGgGGCGGGGCcGCCGCc- -3'
miRNA:   3'- gGUUCG--CGuUgCCGUUCCG-CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 79188 0.66 0.898734
Target:  5'- gCCGAGagccaacggucCGuCGGCGGCGAccgccGCGCcCGCGGa -3'
miRNA:   3'- -GGUUC-----------GC-GUUGCCGUUc----CGCG-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 126509 0.66 0.892501
Target:  5'- gCGAGCGCcuCGGC--GGCuCCgGCGGc -3'
miRNA:   3'- gGUUCGCGuuGCCGuuCCGcGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 185235 0.66 0.916173
Target:  5'- -gGAaCGCGugGGCGAGaGCcucgaCCGCGGu -3'
miRNA:   3'- ggUUcGCGUugCCGUUC-CGc----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 103506 0.66 0.915622
Target:  5'- cCCGGGCGCucucccgGGCGGCcaGAGGa-CCGUGa -3'
miRNA:   3'- -GGUUCGCG-------UUGCCG--UUCCgcGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 92734 0.66 0.921558
Target:  5'- -gGGGCGCGcuCGGUccgauGGCGCCGacgaCGGg -3'
miRNA:   3'- ggUUCGCGUu-GCCGuu---CCGCGGC----GCC- -5'
8961 5' -58.3 NC_002512.2 + 221251 0.66 0.921029
Target:  5'- gCCGGcCGCGGCGgaagucgggggacGCGGGGCG-CGUGGa -3'
miRNA:   3'- -GGUUcGCGUUGC-------------CGUUCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 110748 0.66 0.921558
Target:  5'- gCAGGCGgaagGACGGCucGGCGugaucCCGCGc -3'
miRNA:   3'- gGUUCGCg---UUGCCGuuCCGC-----GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 137221 0.66 0.908273
Target:  5'- gCCcGGCGCgGGCGGCcgucccgGAuccgcgcgggucccGGCGCCgGCGGc -3'
miRNA:   3'- -GGuUCGCG-UUGCCG-------UU--------------CCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 142032 0.66 0.904759
Target:  5'- gCCGGGgGC--CGGCGAccCGCCGCGa -3'
miRNA:   3'- -GGUUCgCGuuGCCGUUccGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 128720 0.66 0.898734
Target:  5'- gCAGGUGUggaggcugggaGACGGCGGacGGCGCUcaagGUGGg -3'
miRNA:   3'- gGUUCGCG-----------UUGCCGUU--CCGCGG----CGCC- -5'
8961 5' -58.3 NC_002512.2 + 49451 0.66 0.892501
Target:  5'- aCGGGCGCcGCc-CGGGGCGCCGUc- -3'
miRNA:   3'- gGUUCGCGuUGccGUUCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 18136 0.66 0.904759
Target:  5'- cCCGcAGCGCccgGGCc--GCGUCGCGGg -3'
miRNA:   3'- -GGU-UCGCGuugCCGuucCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7244 0.66 0.904759
Target:  5'- gCCGGcCGUcGCGGCGGagcGGCGuCCGuCGGg -3'
miRNA:   3'- -GGUUcGCGuUGCCGUU---CCGC-GGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 81858 0.66 0.90117
Target:  5'- -gGAGCGuCGGCGGgaagcgacagaggccCAGGGagGCCGUGGu -3'
miRNA:   3'- ggUUCGC-GUUGCC---------------GUUCCg-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 50015 0.66 0.892501
Target:  5'- gCC-GGUGCAcgucgucgugACGGUggGcGCGCacaCGCGGg -3'
miRNA:   3'- -GGuUCGCGU----------UGCCGuuC-CGCG---GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 22204 0.66 0.910573
Target:  5'- aCgGAGCGCuuCGGCcggcGGGagaGCC-CGGg -3'
miRNA:   3'- -GgUUCGCGuuGCCGu---UCCg--CGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 155732 0.66 0.916173
Target:  5'- cCCGAGCGgAcccuCGGCuacguGGCG-UGCGGc -3'
miRNA:   3'- -GGUUCGCgUu---GCCGuu---CCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 206877 0.66 0.915622
Target:  5'- gCCGAGCucgcCGACGGguAGgucaccaGCGCCGCc- -3'
miRNA:   3'- -GGUUCGc---GUUGCCguUC-------CGCGGCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.