miRNA display CGI


Results 41 - 60 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 20221 0.66 0.921558
Target:  5'- -aGGGC-CAGCGGCAucaucgacagGGGCacGCCGCa- -3'
miRNA:   3'- ggUUCGcGUUGCCGU----------UCCG--CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 87818 0.66 0.916173
Target:  5'- gCGGGCG-GGCGGUcgGAGGgGCCGaGGc -3'
miRNA:   3'- gGUUCGCgUUGCCG--UUCCgCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 147446 0.66 0.908273
Target:  5'- ---uGCGCAGaCGGCggccgucugucgcuGcuggucuucgcgcGGGCGCUGCGGa -3'
miRNA:   3'- gguuCGCGUU-GCCG--------------U-------------UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 137221 0.66 0.908273
Target:  5'- gCCcGGCGCgGGCGGCcgucccgGAuccgcgcgggucccGGCGCCgGCGGc -3'
miRNA:   3'- -GGuUCGCG-UUGCCG-------UU--------------CCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 44598 0.66 0.900564
Target:  5'- uCCAggacguuGGCGUAGCGGUccaucauGGCGacgaccgaguagagaCCGCGGu -3'
miRNA:   3'- -GGU-------UCGCGUUGCCGuu-----CCGC---------------GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 31665 0.66 0.904166
Target:  5'- gCGGGCGCGgccgugguggcggACGGgGAGGaggaCGCGGa -3'
miRNA:   3'- gGUUCGCGU-------------UGCCgUUCCgcg-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 29768 0.66 0.896886
Target:  5'- aUCGA-CGCGACGGCGAugcugaaguaccccGGCGaccCCGCGa -3'
miRNA:   3'- -GGUUcGCGUUGCCGUU--------------CCGC---GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 80677 0.66 0.916173
Target:  5'- ---cGCgGCGGCGGCGacGGGgGCgaGCGGc -3'
miRNA:   3'- gguuCG-CGUUGCCGU--UCCgCGg-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 4144 0.66 0.892501
Target:  5'- cCCGGccGCGCcccGACuGaGCGAGuCGCCGCGGc -3'
miRNA:   3'- -GGUU--CGCG---UUG-C-CGUUCcGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 79188 0.66 0.898734
Target:  5'- gCCGAGagccaacggucCGuCGGCGGCGAccgccGCGCcCGCGGa -3'
miRNA:   3'- -GGUUC-----------GC-GUUGCCGUUc----CGCG-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4793 0.66 0.921558
Target:  5'- gCCGGuUGCGACGGUugcugcGGCagcuGCUGCGGg -3'
miRNA:   3'- -GGUUcGCGUUGCCGuu----CCG----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 100058 0.66 0.921558
Target:  5'- uCCAu-CGCGACGG---GG-GCCGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCguuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 106750 0.66 0.921558
Target:  5'- cCCGgcGGCGCuccgcgucCGGCucucGGC-CCGCGGc -3'
miRNA:   3'- -GGU--UCGCGuu------GCCGuu--CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 22204 0.66 0.910573
Target:  5'- aCgGAGCGCuuCGGCcggcGGGagaGCC-CGGg -3'
miRNA:   3'- -GgUUCGCGuuGCCGu---UCCg--CGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 126509 0.66 0.892501
Target:  5'- gCGAGCGCcuCGGC--GGCuCCgGCGGc -3'
miRNA:   3'- gGUUCGCGuuGCCGuuCCGcGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 68901 0.66 0.892501
Target:  5'- gCCGGG-GCGGuCGuGCugcuGGcCGCCGCGGc -3'
miRNA:   3'- -GGUUCgCGUU-GC-CGuu--CC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 64629 0.66 0.916173
Target:  5'- uCCGGGgcucCGCGACGcguccGCGAGGUcguggaucacGUCGCGGa -3'
miRNA:   3'- -GGUUC----GCGUUGC-----CGUUCCG----------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 135567 0.66 0.910573
Target:  5'- gUCGAGCGUuucGCGcCGGGGCGCaacCGGg -3'
miRNA:   3'- -GGUUCGCGu--UGCcGUUCCGCGgc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 226981 0.66 0.904759
Target:  5'- uUAGGgGCGGCgucuuagcagagGGUGAGGCGgCGCGa -3'
miRNA:   3'- gGUUCgCGUUG------------CCGUUCCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 8409 0.66 0.898734
Target:  5'- gCCGAGCGCcaggAACGcGCAccGCGgCCGguCGGa -3'
miRNA:   3'- -GGUUCGCG----UUGC-CGUucCGC-GGC--GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.