Results 41 - 60 of 619 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 5' | -58.3 | NC_002512.2 | + | 12383 | 0.79 | 0.289255 |
Target: 5'- cCCGAGCucgccuucggGCGGCGGCGGcGGCGCCG-GGa -3' miRNA: 3'- -GGUUCG----------CGUUGCCGUU-CCGCGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 4537 | 0.79 | 0.289255 |
Target: 5'- -gAAGCgGCGACGGUGAGGCGgCGCGa -3' miRNA: 3'- ggUUCG-CGUUGCCGUUCCGCgGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 5529 | 0.8 | 0.247057 |
Target: 5'- aCCGAGgucucccgccCGCGAcccCGGCGcGGCGCCGCGGa -3' miRNA: 3'- -GGUUC----------GCGUU---GCCGUuCCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 75070 | 0.8 | 0.241463 |
Target: 5'- aCCGGGCgGCGACGuCGAGGCGCCGUuucGGg -3' miRNA: 3'- -GGUUCG-CGUUGCcGUUCCGCGGCG---CC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 95971 | 0.84 | 0.129772 |
Target: 5'- cCCGgguuGGCGCAGCGGCGGucggcguccGGCGCCGCGa -3' miRNA: 3'- -GGU----UCGCGUUGCCGUU---------CCGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 103336 | 0.77 | 0.374303 |
Target: 5'- aCCGAGCGUGGgGGCGucgacgaguccGGG-GCCGCGGu -3' miRNA: 3'- -GGUUCGCGUUgCCGU-----------UCCgCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 73325 | 0.76 | 0.398052 |
Target: 5'- aCCGAGCGCAGCaGGCucucccGCGUCGCGu -3' miRNA: 3'- -GGUUCGCGUUG-CCGuuc---CGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 155379 | 0.74 | 0.492806 |
Target: 5'- gUCGGG-GCGGCGGCGccggcGGGCGaUCGCGGa -3' miRNA: 3'- -GGUUCgCGUUGCCGU-----UCCGC-GGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 97457 | 0.74 | 0.483745 |
Target: 5'- -gGAGCGCAAcCGGUucuGGauCGCCGCGGu -3' miRNA: 3'- ggUUCGCGUU-GCCGuu-CC--GCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 86863 | 0.74 | 0.474764 |
Target: 5'- gCGGGCGCAGCuG-AGGGCGCUGgGGa -3' miRNA: 3'- gGUUCGCGUUGcCgUUCCGCGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 85182 | 0.75 | 0.465867 |
Target: 5'- cCCAGGCGCGACGGguccccguGGGuCGCCG-GGu -3' miRNA: 3'- -GGUUCGCGUUGCCgu------UCC-GCGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 17858 | 0.75 | 0.465867 |
Target: 5'- cCCGGGCGCGGugcuCGcGCAGGGC-CCGgGGg -3' miRNA: 3'- -GGUUCGCGUU----GC-CGUUCCGcGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 116591 | 0.75 | 0.457057 |
Target: 5'- aCCuGGgGCGAgGGCGggAGGCccGCCGCGGc -3' miRNA: 3'- -GGuUCgCGUUgCCGU--UCCG--CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 2826 | 0.75 | 0.457057 |
Target: 5'- gCGGGCGCGggcccggacgACGGC-GGGCaGCUGCGGc -3' miRNA: 3'- gGUUCGCGU----------UGCCGuUCCG-CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 43866 | 0.75 | 0.448337 |
Target: 5'- gCCGAGCGCGACgcaGGCGuccAGGUGCCGg-- -3' miRNA: 3'- -GGUUCGCGUUG---CCGU---UCCGCGGCgcc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 7303 | 0.75 | 0.430332 |
Target: 5'- aCAGGCcuccuccGCGACGGCGGGcCGCgGCGGg -3' miRNA: 3'- gGUUCG-------CGUUGCCGUUCcGCGgCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 36867 | 0.75 | 0.422746 |
Target: 5'- aUAGGCGUacuugcagGugGGCAGGGCGgcgcCCGCGGu -3' miRNA: 3'- gGUUCGCG--------UugCCGUUCCGC----GGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 97218 | 0.76 | 0.414412 |
Target: 5'- gCCGGGCGgGACGuCGAGGCGCUgggagaggagcuGCGGg -3' miRNA: 3'- -GGUUCGCgUUGCcGUUCCGCGG------------CGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 38835 | 0.76 | 0.414412 |
Target: 5'- gCCAGGCGCGAcCGGUccacGuGCGCCGCGc -3' miRNA: 3'- -GGUUCGCGUU-GCCGuu--C-CGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 45414 | 0.76 | 0.40618 |
Target: 5'- gCGGGCGCucGACGGCGGcGCcgGCCGCGGc -3' miRNA: 3'- gGUUCGCG--UUGCCGUUcCG--CGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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