miRNA display CGI


Results 41 - 60 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 211355 0.66 0.904759
Target:  5'- aCGcGCGCGGCcugaccgcccGGCGcGGCauGCUGCGGa -3'
miRNA:   3'- gGUuCGCGUUG----------CCGUuCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 128284 0.66 0.916173
Target:  5'- gCCGGGC-CGACGGCcgcccgcaCGaCCGCGGg -3'
miRNA:   3'- -GGUUCGcGUUGCCGuucc----GC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 92734 0.66 0.921558
Target:  5'- -gGGGCGCGcuCGGUccgauGGCGCCGacgaCGGg -3'
miRNA:   3'- ggUUCGCGUu-GCCGuu---CCGCGGC----GCC- -5'
8961 5' -58.3 NC_002512.2 + 111177 0.66 0.90711
Target:  5'- gCC-GGCG-AGCGGCAGgcgggggaagcccacGGCGCCGacguCGGg -3'
miRNA:   3'- -GGuUCGCgUUGCCGUU---------------CCGCGGC----GCC- -5'
8961 5' -58.3 NC_002512.2 + 100058 0.66 0.921558
Target:  5'- uCCAu-CGCGACGG---GG-GCCGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCguuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 127247 0.67 0.886061
Target:  5'- aCCGAG-GCGACGGCcggaacGGCGaCgGCGu -3'
miRNA:   3'- -GGUUCgCGUUGCCGuu----CCGC-GgCGCc -5'
8961 5' -58.3 NC_002512.2 + 104840 0.66 0.919965
Target:  5'- aCgAGGCGgAagguaucgucccucACGGCGAccucGGCcCCGCGGg -3'
miRNA:   3'- -GgUUCGCgU--------------UGCCGUU----CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 105270 0.66 0.892501
Target:  5'- uCCAGGCGCcgacgccgccGACgccgaagacgagGGaCAGGGCGUCGCu- -3'
miRNA:   3'- -GGUUCGCG----------UUG------------CC-GUUCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 144820 0.66 0.892501
Target:  5'- aCGGGgGCcacGAgGGCAcGGCGCUGCu- -3'
miRNA:   3'- gGUUCgCG---UUgCCGUuCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 152703 0.66 0.892501
Target:  5'- ---cGCGUcccCGGuCGGGGUGCgGCGGg -3'
miRNA:   3'- gguuCGCGuu-GCC-GUUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 97103 0.66 0.898735
Target:  5'- gCGGGgGCGACGGCAagcGGGUGaaccagucgaCGCaGGa -3'
miRNA:   3'- gGUUCgCGUUGCCGU---UCCGCg---------GCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 210101 0.66 0.904166
Target:  5'- uUCAAGUGCGACGuCGAGuacgcccugcccuGCGCCcGCGa -3'
miRNA:   3'- -GGUUCGCGUUGCcGUUC-------------CGCGG-CGCc -5'
8961 5' -58.3 NC_002512.2 + 90564 0.66 0.904759
Target:  5'- aCGAGgGCGAgGGCGAcGGC-CC-CGGu -3'
miRNA:   3'- gGUUCgCGUUgCCGUU-CCGcGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 118882 0.66 0.910573
Target:  5'- gCCGGGUGUAcACGGUgAAGaacacggggcccGCGCUGUGGg -3'
miRNA:   3'- -GGUUCGCGU-UGCCG-UUC------------CGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 215755 0.66 0.910573
Target:  5'- cCCAAGgGCuguuucuccAGCGGCA--GCGCCGUc- -3'
miRNA:   3'- -GGUUCgCG---------UUGCCGUucCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 207873 0.66 0.910573
Target:  5'- gCGAGUccgGgGACGGCuucuGGCGCUcucgGCGGu -3'
miRNA:   3'- gGUUCG---CgUUGCCGuu--CCGCGG----CGCC- -5'
8961 5' -58.3 NC_002512.2 + 126441 0.66 0.916173
Target:  5'- gCCcGGCcgGCGACGGC--GGCGgCCGCc- -3'
miRNA:   3'- -GGuUCG--CGUUGCCGuuCCGC-GGCGcc -5'
8961 5' -58.3 NC_002512.2 + 198004 0.66 0.916173
Target:  5'- gCGAGCggGCGACGGacgGGGGCGagggaCGCGc -3'
miRNA:   3'- gGUUCG--CGUUGCCg--UUCCGCg----GCGCc -5'
8961 5' -58.3 NC_002512.2 + 224974 0.66 0.916173
Target:  5'- cCCGcuGgGCGGCGGCGGcGGCGCCc--- -3'
miRNA:   3'- -GGUu-CgCGUUGCCGUU-CCGCGGcgcc -5'
8961 5' -58.3 NC_002512.2 + 168995 0.66 0.916173
Target:  5'- aCCGAGCggucgcgcgccgGCu-CGGCGauccgggcGGGCGuCCGCGa -3'
miRNA:   3'- -GGUUCG------------CGuuGCCGU--------UCCGC-GGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.