miRNA display CGI


Results 41 - 60 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 45414 0.76 0.40618
Target:  5'- gCGGGCGCucGACGGCGGcGCcgGCCGCGGc -3'
miRNA:   3'- gGUUCGCG--UUGCCGUUcCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 123577 0.76 0.40618
Target:  5'- gCCGaaGGCGCuGCGGgucugaGAGGaCGCCGCGGc -3'
miRNA:   3'- -GGU--UCGCGuUGCCg-----UUCC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 38835 0.76 0.414412
Target:  5'- gCCAGGCGCGAcCGGUccacGuGCGCCGCGc -3'
miRNA:   3'- -GGUUCGCGUU-GCCGuu--C-CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 97218 0.76 0.414412
Target:  5'- gCCGGGCGgGACGuCGAGGCGCUgggagaggagcuGCGGg -3'
miRNA:   3'- -GGUUCGCgUUGCcGUUCCGCGG------------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 184382 0.76 0.414412
Target:  5'- gCGGGCGCuuuCGGCGuGGcCGCCGcCGGg -3'
miRNA:   3'- gGUUCGCGuu-GCCGUuCC-GCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 122674 0.76 0.414412
Target:  5'- aCCAGGUG--ACGGCGAGGgGCC-CGGg -3'
miRNA:   3'- -GGUUCGCguUGCCGUUCCgCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 221488 0.75 0.420235
Target:  5'- uCCuGGCGCu-CGGCGuccuauuuuccugcGcGGCGCCGCGGa -3'
miRNA:   3'- -GGuUCGCGuuGCCGU--------------U-CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 36867 0.75 0.422746
Target:  5'- aUAGGCGUacuugcagGugGGCAGGGCGgcgcCCGCGGu -3'
miRNA:   3'- gGUUCGCG--------UugCCGUUCCGC----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7303 0.75 0.430332
Target:  5'- aCAGGCcuccuccGCGACGGCGGGcCGCgGCGGg -3'
miRNA:   3'- gGUUCG-------CGUUGCCGUUCcGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 188627 0.75 0.43118
Target:  5'- aCGAGCGCucgGGCcgcaAGGGCGCCgGCGGc -3'
miRNA:   3'- gGUUCGCGuugCCG----UUCCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 180444 0.75 0.43458
Target:  5'- cCCGGGCGgcgcccgucauuucuCGACGGCucGGCGUCGCGu -3'
miRNA:   3'- -GGUUCGC---------------GUUGCCGuuCCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 217550 0.75 0.44315
Target:  5'- aCCGGGCGUuguugucgcguucgcGACGGCGAgccgguccggcGGCGCCGCcucGGg -3'
miRNA:   3'- -GGUUCGCG---------------UUGCCGUU-----------CCGCGGCG---CC- -5'
8961 5' -58.3 NC_002512.2 + 92108 0.75 0.444876
Target:  5'- gCCGAGCGCcgaccuccagaccGCGGaCAcgcugcGGGCGCUGCGGc -3'
miRNA:   3'- -GGUUCGCGu------------UGCC-GU------UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 146711 0.75 0.448337
Target:  5'- aCgGAGa-CGACGGCGGGGCggcgGCCGCGGc -3'
miRNA:   3'- -GgUUCgcGUUGCCGUUCCG----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 43866 0.75 0.448337
Target:  5'- gCCGAGCGCGACgcaGGCGuccAGGUGCCGg-- -3'
miRNA:   3'- -GGUUCGCGUUG---CCGU---UCCGCGGCgcc -5'
8961 5' -58.3 NC_002512.2 + 116591 0.75 0.457057
Target:  5'- aCCuGGgGCGAgGGCGggAGGCccGCCGCGGc -3'
miRNA:   3'- -GGuUCgCGUUgCCGU--UCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 2826 0.75 0.457057
Target:  5'- gCGGGCGCGggcccggacgACGGC-GGGCaGCUGCGGc -3'
miRNA:   3'- gGUUCGCGU----------UGCCGuUCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 17858 0.75 0.465867
Target:  5'- cCCGGGCGCGGugcuCGcGCAGGGC-CCGgGGg -3'
miRNA:   3'- -GGUUCGCGUU----GC-CGUUCCGcGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 85182 0.75 0.465867
Target:  5'- cCCAGGCGCGACGGguccccguGGGuCGCCG-GGu -3'
miRNA:   3'- -GGUUCGCGUUGCCgu------UCC-GCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 131987 0.75 0.465867
Target:  5'- aCgAGGuCGCGugGGCcgccccGGGCGCCGgGGg -3'
miRNA:   3'- -GgUUC-GCGUugCCGu-----UCCGCGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.