miRNA display CGI


Results 41 - 60 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 10760 0.69 0.759012
Target:  5'- -aGAGCGCGucguCGGCcc--CGCCGCGGu -3'
miRNA:   3'- ggUUCGCGUu---GCCGuuccGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 10821 0.68 0.827627
Target:  5'- gUCGAGCuCGaagcccGCGGgGAGccccGCGCCGCGGc -3'
miRNA:   3'- -GGUUCGcGU------UGCCgUUC----CGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 11013 0.73 0.558176
Target:  5'- -aGGGCGCGcACGGCGucGGUGCCcCGGg -3'
miRNA:   3'- ggUUCGCGU-UGCCGUu-CCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 11252 0.66 0.921558
Target:  5'- gCCGGGCGCGACagGGUcccGAcGCGCguccuucgagucCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUG--CCG---UUcCGCG------------GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 11420 0.68 0.835556
Target:  5'- aCGAGgagaugacCGCGGuCcGCGGGGaCGCCGCGGa -3'
miRNA:   3'- gGUUC--------GCGUU-GcCGUUCC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 11665 0.69 0.776927
Target:  5'- --cGGCGCcGCGGCc---CGCCGCGGc -3'
miRNA:   3'- gguUCGCGuUGCCGuuccGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 11843 0.66 0.910573
Target:  5'- aCGAcGCgGCGACGGgGAGG-GaCGCGGa -3'
miRNA:   3'- gGUU-CG-CGUUGCCgUUCCgCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 12285 0.66 0.916173
Target:  5'- cCCGAGuCGcCGACgacccccgaGGC--GGCGCCGcCGGa -3'
miRNA:   3'- -GGUUC-GC-GUUG---------CCGuuCCGCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 12383 0.79 0.289255
Target:  5'- cCCGAGCucgccuucggGCGGCGGCGGcGGCGCCG-GGa -3'
miRNA:   3'- -GGUUCG----------CGUUGCCGUU-CCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 13366 0.69 0.768024
Target:  5'- cUCGGGCGCGuuCGu---GGUGCCGCGGu -3'
miRNA:   3'- -GGUUCGCGUu-GCcguuCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 13455 0.7 0.740691
Target:  5'- -aGAGgGCGGCGGCGAgccuGGCGuCCcCGGa -3'
miRNA:   3'- ggUUCgCGUUGCCGUU----CCGC-GGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 13683 0.67 0.873271
Target:  5'- aCGAG-GCGACGGCcgcggcggugaucacGGGCGCgaucccgagaCGCGGg -3'
miRNA:   3'- gGUUCgCGUUGCCGu--------------UCCGCG----------GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 14320 0.68 0.811295
Target:  5'- gUAGGCGUAGaCGacGCcgAGGGCGCCGaCGGc -3'
miRNA:   3'- gGUUCGCGUU-GC--CG--UUCCGCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 14509 0.7 0.703086
Target:  5'- gCCGGGgcugGCGACGGCGAaGCGCgCGaCGGa -3'
miRNA:   3'- -GGUUCg---CGUUGCCGUUcCGCG-GC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 14722 0.69 0.749898
Target:  5'- cCCGAGCaGCAggACGGCcAGGUGCuCGUc- -3'
miRNA:   3'- -GGUUCG-CGU--UGCCGuUCCGCG-GCGcc -5'
8961 5' -58.3 NC_002512.2 + 15212 0.7 0.722028
Target:  5'- -aGAGCGgGAgGGCGggucgccgAGGCGCCG-GGa -3'
miRNA:   3'- ggUUCGCgUUgCCGU--------UCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 15624 0.71 0.697358
Target:  5'- gCCAGGCGaCAGCGGaacuccucgGCCGCGGg -3'
miRNA:   3'- -GGUUCGC-GUUGCCguuccg---CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 15666 0.66 0.910001
Target:  5'- aCGAGcCGCcuGACgucccggGGCAgcGGGCGCaGCGGg -3'
miRNA:   3'- gGUUC-GCG--UUG-------CCGU--UCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 15953 0.67 0.858317
Target:  5'- aCAucAGCGCGGCGacucGCAcu-CGCCGCGGu -3'
miRNA:   3'- gGU--UCGCGUUGC----CGUuccGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 17858 0.75 0.465867
Target:  5'- cCCGGGCGCGGugcuCGcGCAGGGC-CCGgGGg -3'
miRNA:   3'- -GGUUCGCGUU----GC-CGUUCCGcGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.