miRNA display CGI


Results 41 - 60 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 221251 0.66 0.921029
Target:  5'- gCCGGcCGCGGCGgaagucgggggacGCGGGGCG-CGUGGa -3'
miRNA:   3'- -GGUUcGCGUUGC-------------CGUUCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 221152 0.67 0.886061
Target:  5'- cCCGu-CGuCGACGGgcGGGCGCgCGCGGc -3'
miRNA:   3'- -GGUucGC-GUUGCCguUCCGCG-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 221070 0.7 0.712587
Target:  5'- cCCAAGCucCGGCGGCGGaacGGCGUgGgGGa -3'
miRNA:   3'- -GGUUCGc-GUUGCCGUU---CCGCGgCgCC- -5'
8961 5' -58.3 NC_002512.2 + 220126 0.66 0.898735
Target:  5'- gCCAcGCGgGGCGGCGGGuccggcucCGCCGCc- -3'
miRNA:   3'- -GGUuCGCgUUGCCGUUCc-------GCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 219217 0.66 0.89059
Target:  5'- gCCGGGCcgGCcuCGGCGAGGUcgggaucgugcucgGCCGCc- -3'
miRNA:   3'- -GGUUCG--CGuuGCCGUUCCG--------------CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 219048 0.67 0.879419
Target:  5'- gUCGGcCGCGGC-GCGGGGCuccCCGCGGg -3'
miRNA:   3'- -GGUUcGCGUUGcCGUUCCGc--GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 218905 0.68 0.827627
Target:  5'- gCCAcGCGgGGCGGCuc-GUGCCGCu- -3'
miRNA:   3'- -GGUuCGCgUUGCCGuucCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 218219 0.66 0.892501
Target:  5'- cUCGGGcCGCGGCgGGCcgcGGCGCCGauauaugucCGGg -3'
miRNA:   3'- -GGUUC-GCGUUG-CCGuu-CCGCGGC---------GCC- -5'
8961 5' -58.3 NC_002512.2 + 217834 0.67 0.858317
Target:  5'- gCGGGCGguuCGGCAgAGGCGgCaGCGGu -3'
miRNA:   3'- gGUUCGCguuGCCGU-UCCGCgG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 217550 0.75 0.44315
Target:  5'- aCCGGGCGUuguugucgcguucgcGACGGCGAgccgguccggcGGCGCCGCcucGGg -3'
miRNA:   3'- -GGUUCGCG---------------UUGCCGUU-----------CCGCGGCG---CC- -5'
8961 5' -58.3 NC_002512.2 + 217466 0.72 0.625763
Target:  5'- gCCucGCGC-GCGGCGAgcucgcgaucccGGCGCCGCc- -3'
miRNA:   3'- -GGuuCGCGuUGCCGUU------------CCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 217120 0.7 0.712587
Target:  5'- nCCGAGUccuGCGGCGGCAgcagcGGGCccagcuugcGCCGCaGGc -3'
miRNA:   3'- -GGUUCG---CGUUGCCGU-----UCCG---------CGGCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 217089 0.77 0.344164
Target:  5'- cCCGAGCauccGCAGgGGCAgcggGGGCGCCGCc- -3'
miRNA:   3'- -GGUUCG----CGUUgCCGU----UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 216780 0.77 0.336907
Target:  5'- aCCGAGCGCcaggcagaacACGGCGucguugacgauGGCGUCGCGGg -3'
miRNA:   3'- -GGUUCGCGu---------UGCCGUu----------CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 216047 0.69 0.749898
Target:  5'- gCGAGUGCGACgGGCGuucGGgGCCG-GGu -3'
miRNA:   3'- gGUUCGCGUUG-CCGUu--CCgCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 215755 0.66 0.910573
Target:  5'- cCCAAGgGCuguuucuccAGCGGCA--GCGCCGUc- -3'
miRNA:   3'- -GGUUCgCG---------UUGCCGUucCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 212866 0.73 0.573494
Target:  5'- uCCGAGCGUccccuccuccggaGACGGCGGccauggaccgagucGGCGCCG-GGa -3'
miRNA:   3'- -GGUUCGCG-------------UUGCCGUU--------------CCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 211759 0.76 0.395634
Target:  5'- cCCGGGCGCuGCGGgAggacguggaggcccGGGUgGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGuUGCCgU--------------UCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 211686 0.66 0.910001
Target:  5'- aCCGuGCGCGacgugauGCGGCAcgaggAGcGCGCCuaCGGg -3'
miRNA:   3'- -GGUuCGCGU-------UGCCGU-----UC-CGCGGc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 211355 0.66 0.904759
Target:  5'- aCGcGCGCGGCcugaccgcccGGCGcGGCauGCUGCGGa -3'
miRNA:   3'- gGUuCGCGUUG----------CCGUuCCG--CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.