miRNA display CGI


Results 21 - 40 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 226201 0.67 0.872578
Target:  5'- gCCGuuAGCGC-GCGGCcGGGCcaucaCCGgGGa -3'
miRNA:   3'- -GGU--UCGCGuUGCCGuUCCGc----GGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 225799 0.74 0.48736
Target:  5'- gCCGGGcCGCgGGCGGCcGGGUggccugggaccucgaGCCGCGGg -3'
miRNA:   3'- -GGUUC-GCG-UUGCCGuUCCG---------------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 225487 0.67 0.879419
Target:  5'- gUCGAcCGCGAUcuaCGGGGcCGCCGCGGg -3'
miRNA:   3'- -GGUUcGCGUUGcc-GUUCC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 224974 0.66 0.916173
Target:  5'- cCCGcuGgGCGGCGGCGGcGGCGCCc--- -3'
miRNA:   3'- -GGUu-CgCGUUGCCGUU-CCGCGGcgcc -5'
8961 5' -58.3 NC_002512.2 + 224600 0.67 0.857584
Target:  5'- -aGGGCGCGggacGCGGUgccgaccgggcucGGGGUcgccGCCGCGGc -3'
miRNA:   3'- ggUUCGCGU----UGCCG-------------UUCCG----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 224163 0.68 0.827627
Target:  5'- -gAGGCGgGGCGG--GGGCGC-GCGGa -3'
miRNA:   3'- ggUUCGCgUUGCCguUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 224149 0.66 0.916173
Target:  5'- aCAAGCGUAG-GGUu-GGUGCCaccggaGCGGa -3'
miRNA:   3'- gGUUCGCGUUgCCGuuCCGCGG------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 223518 0.68 0.811295
Target:  5'- aCCAcGGCGgAgaACGGCAc-GCGCCcGCGGc -3'
miRNA:   3'- -GGU-UCGCgU--UGCCGUucCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 223287 0.69 0.794375
Target:  5'- gCCGcGCGCAGCuaCAuGGUGCCGCcGGu -3'
miRNA:   3'- -GGUuCGCGUUGccGUuCCGCGGCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 223093 0.69 0.794375
Target:  5'- uCCGcggcuGCGuCGACGGgGAGGgGgauCCGCGGg -3'
miRNA:   3'- -GGUu----CGC-GUUGCCgUUCCgC---GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 222868 0.69 0.749898
Target:  5'- aCGAGCc---CGGCAAGGCcCUGCGGc -3'
miRNA:   3'- gGUUCGcguuGCCGUUCCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 222769 0.68 0.819538
Target:  5'- uCUggGC-CAACGaGCAcGGCuaCGCGGa -3'
miRNA:   3'- -GGuuCGcGUUGC-CGUuCCGcgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 222648 0.66 0.916173
Target:  5'- uCCGc-CGCGACGGCcggccgggccgaGGGGCGCCuCGa -3'
miRNA:   3'- -GGUucGCGUUGCCG------------UUCCGCGGcGCc -5'
8961 5' -58.3 NC_002512.2 + 222403 0.73 0.533544
Target:  5'- -gGAGCGCcGCGGCuucGGcgggggccggcagccGCGCCGCGGc -3'
miRNA:   3'- ggUUCGCGuUGCCGu--UC---------------CGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 222345 0.67 0.858317
Target:  5'- uCCAGGaggaggaGgAGCGGCAcGGgGCCGCc- -3'
miRNA:   3'- -GGUUCg------CgUUGCCGUuCCgCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 221917 0.7 0.740691
Target:  5'- gCCAGcGCGCGAUGGCcuGGUGCgGUu- -3'
miRNA:   3'- -GGUU-CGCGUUGCCGuuCCGCGgCGcc -5'
8961 5' -58.3 NC_002512.2 + 221735 0.69 0.794375
Target:  5'- cCCGAGCGCcuGGCGGac--GCGCCGuCGa -3'
miRNA:   3'- -GGUUCGCG--UUGCCguucCGCGGC-GCc -5'
8961 5' -58.3 NC_002512.2 + 221488 0.75 0.420235
Target:  5'- uCCuGGCGCu-CGGCGuccuauuuuccugcGcGGCGCCGCGGa -3'
miRNA:   3'- -GGuUCGCGuuGCCGU--------------U-CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 221436 0.69 0.771599
Target:  5'- gCCAuGCGgAccGCGGcCGGGGCgcggucguccgaccgGCCGCGGu -3'
miRNA:   3'- -GGUuCGCgU--UGCC-GUUCCG---------------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 221390 0.7 0.740691
Target:  5'- cUCGGGCGgGGCgcgGGCGGGGagGCgGCGGg -3'
miRNA:   3'- -GGUUCGCgUUG---CCGUUCCg-CGgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.