Results 21 - 40 of 619 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 5' | -58.3 | NC_002512.2 | + | 44598 | 0.66 | 0.900564 |
Target: 5'- uCCAggacguuGGCGUAGCGGUccaucauGGCGacgaccgaguagagaCCGCGGu -3' miRNA: 3'- -GGU-------UCGCGUUGCCGuu-----CCGC---------------GGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 115492 | 0.66 | 0.898734 |
Target: 5'- -uGAGCGCGAgUGGCGGGuCGCCGgucuccagggcCGGg -3' miRNA: 3'- ggUUCGCGUU-GCCGUUCcGCGGC-----------GCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 137221 | 0.66 | 0.908273 |
Target: 5'- gCCcGGCGCgGGCGGCcgucccgGAuccgcgcgggucccGGCGCCgGCGGc -3' miRNA: 3'- -GGuUCGCG-UUGCCG-------UU--------------CCGCGG-CGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 83155 | 0.66 | 0.892501 |
Target: 5'- gUCGGGCcCGGCGGCcgcGGCcGCCGCc- -3' miRNA: 3'- -GGUUCGcGUUGCCGuu-CCG-CGGCGcc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 50015 | 0.66 | 0.892501 |
Target: 5'- gCC-GGUGCAcgucgucgugACGGUggGcGCGCacaCGCGGg -3' miRNA: 3'- -GGuUCGCGU----------UGCCGuuC-CGCG---GCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 31665 | 0.66 | 0.904166 |
Target: 5'- gCGGGCGCGgccgugguggcggACGGgGAGGaggaCGCGGa -3' miRNA: 3'- gGUUCGCGU-------------UGCCgUUCCgcg-GCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 148127 | 0.66 | 0.892501 |
Target: 5'- gCCGAGUG-AGCGuucucuAGcGCGCCGCGGc -3' miRNA: 3'- -GGUUCGCgUUGCcgu---UC-CGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 142032 | 0.66 | 0.904759 |
Target: 5'- gCCGGGgGC--CGGCGAccCGCCGCGa -3' miRNA: 3'- -GGUUCgCGuuGCCGUUccGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 53206 | 0.66 | 0.904759 |
Target: 5'- aCAAG-GCGACGcGCcagucccagGAGGCGCgcugGCGGg -3' miRNA: 3'- gGUUCgCGUUGC-CG---------UUCCGCGg---CGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 49451 | 0.66 | 0.892501 |
Target: 5'- aCGGGCGCcGCc-CGGGGCGCCGUc- -3' miRNA: 3'- gGUUCGCGuUGccGUUCCGCGGCGcc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 11843 | 0.66 | 0.910573 |
Target: 5'- aCGAcGCgGCGACGGgGAGG-GaCGCGGa -3' miRNA: 3'- gGUU-CG-CGUUGCCgUUCCgCgGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 8409 | 0.66 | 0.898734 |
Target: 5'- gCCGAGCGCcaggAACGcGCAccGCGgCCGguCGGa -3' miRNA: 3'- -GGUUCGCG----UUGC-CGUucCGC-GGC--GCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 49600 | 0.66 | 0.892501 |
Target: 5'- gUCGAGgGCGACGGgAAcGCcGCCGCc- -3' miRNA: 3'- -GGUUCgCGUUGCCgUUcCG-CGGCGcc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 29768 | 0.66 | 0.896886 |
Target: 5'- aUCGA-CGCGACGGCGAugcugaaguaccccGGCGaccCCGCGa -3' miRNA: 3'- -GGUUcGCGUUGCCGUU--------------CCGC---GGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 79188 | 0.66 | 0.898734 |
Target: 5'- gCCGAGagccaacggucCGuCGGCGGCGAccgccGCGCcCGCGGa -3' miRNA: 3'- -GGUUC-----------GC-GUUGCCGUUc----CGCG-GCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 23353 | 0.66 | 0.892501 |
Target: 5'- aCGAGUGCGGCGaGCAcgAGGUGaCCaucacgGUGGa -3' miRNA: 3'- gGUUCGCGUUGC-CGU--UCCGC-GG------CGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 65453 | 0.66 | 0.915622 |
Target: 5'- gCCGAGCgGCuuccCGGCGAccugcauGGCG-UGCGGg -3' miRNA: 3'- -GGUUCG-CGuu--GCCGUU-------CCGCgGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 18136 | 0.66 | 0.904759 |
Target: 5'- cCCGcAGCGCccgGGCc--GCGUCGCGGg -3' miRNA: 3'- -GGU-UCGCGuugCCGuucCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 135567 | 0.66 | 0.910573 |
Target: 5'- gUCGAGCGUuucGCGcCGGGGCGCaacCGGg -3' miRNA: 3'- -GGUUCGCGu--UGCcGUUCCGCGgc-GCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 10097 | 0.66 | 0.892501 |
Target: 5'- cCCuaucuGUGUcccCGGCcGGGCcgGCCGCGGg -3' miRNA: 3'- -GGuu---CGCGuu-GCCGuUCCG--CGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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