miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 148127 0.66 0.892501
Target:  5'- gCCGAGUG-AGCGuucucuAGcGCGCCGCGGc -3'
miRNA:   3'- -GGUUCGCgUUGCcgu---UC-CGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 115492 0.66 0.898734
Target:  5'- -uGAGCGCGAgUGGCGGGuCGCCGgucuccagggcCGGg -3'
miRNA:   3'- ggUUCGCGUU-GCCGUUCcGCGGC-----------GCC- -5'
8961 5' -58.3 NC_002512.2 + 23353 0.66 0.892501
Target:  5'- aCGAGUGCGGCGaGCAcgAGGUGaCCaucacgGUGGa -3'
miRNA:   3'- gGUUCGCGUUGC-CGU--UCCGC-GG------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 68901 0.66 0.892501
Target:  5'- gCCGGG-GCGGuCGuGCugcuGGcCGCCGCGGc -3'
miRNA:   3'- -GGUUCgCGUU-GC-CGuu--CC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 49600 0.66 0.892501
Target:  5'- gUCGAGgGCGACGGgAAcGCcGCCGCc- -3'
miRNA:   3'- -GGUUCgCGUUGCCgUUcCG-CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 155252 0.66 0.89812
Target:  5'- cCCGucgcGGCGuCGACGGCucgcgggagccGAGGCggcucgaGCCGaCGGa -3'
miRNA:   3'- -GGU----UCGC-GUUGCCG-----------UUCCG-------CGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 126509 0.66 0.892501
Target:  5'- gCGAGCGCcuCGGC--GGCuCCgGCGGc -3'
miRNA:   3'- gGUUCGCGuuGCCGuuCCGcGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 128720 0.66 0.898734
Target:  5'- gCAGGUGUggaggcugggaGACGGCGGacGGCGCUcaagGUGGg -3'
miRNA:   3'- gGUUCGCG-----------UUGCCGUU--CCGCGG----CGCC- -5'
8961 5' -58.3 NC_002512.2 + 79188 0.66 0.898734
Target:  5'- gCCGAGagccaacggucCGuCGGCGGCGAccgccGCGCcCGCGGa -3'
miRNA:   3'- -GGUUC-----------GC-GUUGCCGUUc----CGCG-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 29768 0.66 0.896886
Target:  5'- aUCGA-CGCGACGGCGAugcugaaguaccccGGCGaccCCGCGa -3'
miRNA:   3'- -GGUUcGCGUUGCCGUU--------------CCGC---GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 62717 0.66 0.892501
Target:  5'- gCGcAGCGCGucGCGGuCGAcGGCcUCGCGGg -3'
miRNA:   3'- gGU-UCGCGU--UGCC-GUU-CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 83155 0.66 0.892501
Target:  5'- gUCGGGCcCGGCGGCcgcGGCcGCCGCc- -3'
miRNA:   3'- -GGUUCGcGUUGCCGuu-CCG-CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 75557 0.66 0.892501
Target:  5'- gCGGGCucGCcGgGGCGGGGCcGCCGCc- -3'
miRNA:   3'- gGUUCG--CGuUgCCGUUCCG-CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 116703 0.66 0.891866
Target:  5'- gCgGAGCG-GACGGCGAcgccGGUcgcgucccgcccgGCCGCGGc -3'
miRNA:   3'- -GgUUCGCgUUGCCGUU----CCG-------------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 50015 0.66 0.892501
Target:  5'- gCC-GGUGCAcgucgucgugACGGUggGcGCGCacaCGCGGg -3'
miRNA:   3'- -GGuUCGCGU----------UGCCGuuC-CGCG---GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 49451 0.66 0.892501
Target:  5'- aCGGGCGCcGCc-CGGGGCGCCGUc- -3'
miRNA:   3'- gGUUCGCGuUGccGUUCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 109951 0.66 0.898734
Target:  5'- aCCGcGUGCGGgGGCGA--CGCCGCGc -3'
miRNA:   3'- -GGUuCGCGUUgCCGUUccGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 10097 0.66 0.892501
Target:  5'- cCCuaucuGUGUcccCGGCcGGGCcgGCCGCGGg -3'
miRNA:   3'- -GGuu---CGCGuu-GCCGuUCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 8409 0.66 0.898734
Target:  5'- gCCGAGCGCcaggAACGcGCAccGCGgCCGguCGGa -3'
miRNA:   3'- -GGUUCGCG----UUGC-CGUucCGC-GGC--GCC- -5'
8961 5' -58.3 NC_002512.2 + 4144 0.66 0.892501
Target:  5'- cCCGGccGCGCcccGACuGaGCGAGuCGCCGCGGc -3'
miRNA:   3'- -GGUU--CGCG---UUG-C-CGUUCcGCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.