miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 7303 0.75 0.430332
Target:  5'- aCAGGCcuccuccGCGACGGCGGGcCGCgGCGGg -3'
miRNA:   3'- gGUUCG-------CGUUGCCGUUCcGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 37717 0.77 0.344164
Target:  5'- gCAGGacggacaGCGAgGGCAGGG-GCCGCGGg -3'
miRNA:   3'- gGUUCg------CGUUgCCGUUCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 79341 0.77 0.374303
Target:  5'- cCCAGGuCGCGGCGGCGuacccucgcGGcCGCCGCGu -3'
miRNA:   3'- -GGUUC-GCGUUGCCGUu--------CC-GCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 103336 0.77 0.374303
Target:  5'- aCCGAGCGUGGgGGCGucgacgaguccGGG-GCCGCGGu -3'
miRNA:   3'- -GGUUCGCGUUgCCGU-----------UCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 73325 0.76 0.398052
Target:  5'- aCCGAGCGCAGCaGGCucucccGCGUCGCGu -3'
miRNA:   3'- -GGUUCGCGUUG-CCGuuc---CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 45414 0.76 0.40618
Target:  5'- gCGGGCGCucGACGGCGGcGCcgGCCGCGGc -3'
miRNA:   3'- gGUUCGCG--UUGCCGUUcCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 38835 0.76 0.414412
Target:  5'- gCCAGGCGCGAcCGGUccacGuGCGCCGCGc -3'
miRNA:   3'- -GGUUCGCGUU-GCCGuu--C-CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 97218 0.76 0.414412
Target:  5'- gCCGGGCGgGACGuCGAGGCGCUgggagaggagcuGCGGg -3'
miRNA:   3'- -GGUUCGCgUUGCcGUUCCGCGG------------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 36867 0.75 0.422746
Target:  5'- aUAGGCGUacuugcagGugGGCAGGGCGgcgcCCGCGGu -3'
miRNA:   3'- gGUUCGCG--------UugCCGUUCCGC----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4562 0.77 0.343433
Target:  5'- aCCGacggcugcGGCGUcuggGGCGGCGGaggaggcGGCGCCGCGGg -3'
miRNA:   3'- -GGU--------UCGCG----UUGCCGUU-------CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 83850 0.77 0.343433
Target:  5'- gCAGGCGCucuugaagaaguaGACGGgGuAGGCGUCGCGGu -3'
miRNA:   3'- gGUUCGCG-------------UUGCCgU-UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 28073 0.77 0.336907
Target:  5'- cCCGGGCGCGGCGGagacggcggaGAGGuCGCCGCc- -3'
miRNA:   3'- -GGUUCGCGUUGCCg---------UUCC-GCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 95971 0.84 0.129772
Target:  5'- cCCGgguuGGCGCAGCGGCGGucggcguccGGCGCCGCGa -3'
miRNA:   3'- -GGU----UCGCGUUGCCGUU---------CCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 75070 0.8 0.241463
Target:  5'- aCCGGGCgGCGACGuCGAGGCGCCGUuucGGg -3'
miRNA:   3'- -GGUUCG-CGUUGCcGUUCCGCGGCG---CC- -5'
8961 5' -58.3 NC_002512.2 + 5529 0.8 0.247057
Target:  5'- aCCGAGgucucccgccCGCGAcccCGGCGcGGCGCCGCGGa -3'
miRNA:   3'- -GGUUC----------GCGUU---GCCGUuCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4537 0.79 0.289255
Target:  5'- -gAAGCgGCGACGGUGAGGCGgCGCGa -3'
miRNA:   3'- ggUUCG-CGUUGCCGUUCCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 12383 0.79 0.289255
Target:  5'- cCCGAGCucgccuucggGCGGCGGCGGcGGCGCCG-GGa -3'
miRNA:   3'- -GGUUCG----------CGUUGCCGUU-CCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 6342 0.78 0.295725
Target:  5'- aCCGGGCGCGG-GGCcGGcGgGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUgCCGuUC-CgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 32843 0.78 0.301644
Target:  5'- cCCAGGCuGCAggaggugACGGUgccguGGGUGCCGCGGu -3'
miRNA:   3'- -GGUUCG-CGU-------UGCCGu----UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 104864 0.78 0.322729
Target:  5'- aCCucGCGCAGCGGgc-GGCGCCGaCGGc -3'
miRNA:   3'- -GGuuCGCGUUGCCguuCCGCGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.