miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 74 0.73 0.558176
Target:  5'- gCGGGCGCGAggaGGCGagAGGCGgCGgGGg -3'
miRNA:   3'- gGUUCGCGUUg--CCGU--UCCGCgGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 140 0.74 0.511158
Target:  5'- gCCGGGgaGCcg-GGCGGGGCGCCgGCGGa -3'
miRNA:   3'- -GGUUCg-CGuugCCGUUCCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 2029 0.74 0.52044
Target:  5'- aCCAGGaggaGCGACaGCAGGGUgaucgGCUGCGGc -3'
miRNA:   3'- -GGUUCg---CGUUGcCGUUCCG-----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 2099 0.73 0.54866
Target:  5'- gCGGGCGguACGGCcgcGGCucgGUCGCGGg -3'
miRNA:   3'- gGUUCGCguUGCCGuu-CCG---CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 2319 0.67 0.886061
Target:  5'- ---uGCGcCGGCGGUccgGAGGCcucgGUCGCGGa -3'
miRNA:   3'- gguuCGC-GUUGCCG---UUCCG----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 2826 0.75 0.457057
Target:  5'- gCGGGCGCGggcccggacgACGGC-GGGCaGCUGCGGc -3'
miRNA:   3'- gGUUCGCGU----------UGCCGuUCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 3066 0.68 0.811295
Target:  5'- gCGGaCGCGGCGGCGGcGGCgGCCacgGCGGc -3'
miRNA:   3'- gGUUcGCGUUGCCGUU-CCG-CGG---CGCC- -5'
8961 5' -58.3 NC_002512.2 + 3366 0.7 0.731398
Target:  5'- aUCGAG-GaCGGCGGCAGGGCcGCCaGCaGGa -3'
miRNA:   3'- -GGUUCgC-GUUGCCGUUCCG-CGG-CG-CC- -5'
8961 5' -58.3 NC_002512.2 + 3984 0.66 0.921558
Target:  5'- gUCGAcGCGCuccucgggaGGCGggGGGCGUCGCaGGa -3'
miRNA:   3'- -GGUU-CGCGuug------CCGU--UCCGCGGCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 4144 0.66 0.892501
Target:  5'- cCCGGccGCGCcccGACuGaGCGAGuCGCCGCGGc -3'
miRNA:   3'- -GGUU--CGCG---UUG-C-CGUUCcGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4450 0.67 0.865542
Target:  5'- gCCGGGCGCGGgGGUc-GGCGUCGg-- -3'
miRNA:   3'- -GGUUCGCGUUgCCGuuCCGCGGCgcc -5'
8961 5' -58.3 NC_002512.2 + 4537 0.79 0.289255
Target:  5'- -gAAGCgGCGACGGUGAGGCGgCGCGa -3'
miRNA:   3'- ggUUCG-CGUUGCCGUUCCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 4562 0.77 0.343433
Target:  5'- aCCGacggcugcGGCGUcuggGGCGGCGGaggaggcGGCGCCGCGGg -3'
miRNA:   3'- -GGU--------UCGCG----UUGCCGUU-------CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4740 0.67 0.872578
Target:  5'- aCGAcUGCGACGGCugcuguGGCaGCUGUGGc -3'
miRNA:   3'- gGUUcGCGUUGCCGuu----CCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4793 0.66 0.921558
Target:  5'- gCCGGuUGCGACGGUugcugcGGCagcuGCUGCGGg -3'
miRNA:   3'- -GGUUcGCGUUGCCGuu----CCG----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4848 0.71 0.674287
Target:  5'- -gGAGCGCGGCcaucGCGGGGUucGCCGCGu -3'
miRNA:   3'- ggUUCGCGUUGc---CGUUCCG--CGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 4893 0.73 0.529787
Target:  5'- -gGAGCgGCGACGGgAagaGGGCGCCGCc- -3'
miRNA:   3'- ggUUCG-CGUUGCCgU---UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 5000 0.69 0.759012
Target:  5'- aCGGGUcgaagGCGGcCGGCGAGGCgggaaaccagGCCGUGGc -3'
miRNA:   3'- gGUUCG-----CGUU-GCCGUUCCG----------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 5173 0.73 0.576378
Target:  5'- aCCGGG-GCGGCGGCcggccccagcAGGGCGggcaggaCCGCGGg -3'
miRNA:   3'- -GGUUCgCGUUGCCG----------UUCCGC-------GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 5244 0.71 0.65492
Target:  5'- cUCGGGCGCGuaGGcCGAGGcCGCgGCGGc -3'
miRNA:   3'- -GGUUCGCGUugCC-GUUCC-GCGgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.